BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0507300 Os05g0507300|AK060834
(302 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08450.1 | chr1:2668008-2671800 REVERSE LENGTH=425 371 e-103
AT1G09210.1 | chr1:2973217-2976655 REVERSE LENGTH=425 300 6e-82
AT1G56340.1 | chr1:21090059-21092630 REVERSE LENGTH=426 293 9e-80
AT5G61790.1 | chr5:24827394-24829642 REVERSE LENGTH=531 128 5e-30
AT5G07340.2 | chr5:2317300-2319458 FORWARD LENGTH=541 112 2e-25
>AT1G08450.1 | chr1:2668008-2671800 REVERSE LENGTH=425
Length = 424
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/234 (76%), Positives = 198/234 (84%)
Query: 1 MSGYVNQKKFGGDTPYSFMFGPDICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFY 60
+SGYVNQK+FGGDTPYS MFGPDICG QTKKLH+I+SYQGQNYPIKKDL+CETDKL HFY
Sbjct: 122 LSGYVNQKQFGGDTPYSLMFGPDICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFY 181
Query: 61 TFILRPDASYSLLVDNREREFGSMYTDWDILPPRKIKESNAKKPKDWDDREYIEDPDEVK 120
TFILRPDASYS+LVDN+EREFGSMYTDWDILPPRKIK NAKKP+DWDDREYI+DP++VK
Sbjct: 182 TFILRPDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVK 241
Query: 121 PEGYDSXXXXXXXXXXXXXXXXXXXXXGVWKPRMIPNPEYKGRWKRKKIKNPNYKGKWKI 180
PEG+DS G+W+P IPN YKG WK K+IKNPNYKGKWK
Sbjct: 242 PEGFDSIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKN 301
Query: 181 PWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARSVVDE 234
PWIDNPEFEDDPDLYVLK ++Y GIEVWQVKAGS+FDNILICDDP YARS+VD+
Sbjct: 302 PWIDNPEFEDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDD 355
>AT1G09210.1 | chr1:2973217-2976655 REVERSE LENGTH=425
Length = 424
Score = 300 bits (768), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 143/235 (60%), Positives = 181/235 (77%)
Query: 1 MSGYVNQKKFGGDTPYSFMFGPDICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFY 60
+SG V+QKKFGGDTPYS MFGPDICG TKK+H IL+Y N+ IKKD+ CETD+LTH Y
Sbjct: 116 LSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNEANHLIKKDVPCETDQLTHVY 175
Query: 61 TFILRPDASYSLLVDNREREFGSMYTDWDILPPRKIKESNAKKPKDWDDREYIEDPDEVK 120
TFILRPDA+YS+L+DN E++ GS+Y+DWD+LPP+KIK+ +AKKP+DWD++EYI DP++ K
Sbjct: 176 TFILRPDATYSILIDNVEKQTGSLYSDWDLLPPKKIKDPSAKKPEDWDEQEYISDPEDKK 235
Query: 121 PEGYDSXXXXXXXXXXXXXXXXXXXXXGVWKPRMIPNPEYKGRWKRKKIKNPNYKGKWKI 180
P+GYD G W IPNPEY G WK K+IKNPNYKGKW+
Sbjct: 236 PDGYDDIPKEIPDTDSKKPEDWDDEEDGEWTAPTIPNPEYMGEWKPKQIKNPNYKGKWEA 295
Query: 181 PWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARSVVDEV 235
P IDNP+F+DDP+LYV L+YVG+E+WQVK+GS+FDN+LICDDP+YA+ + DE
Sbjct: 296 PLIDNPDFKDDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADET 350
>AT1G56340.1 | chr1:21090059-21092630 REVERSE LENGTH=426
Length = 425
Score = 293 bits (749), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 140/235 (59%), Positives = 176/235 (74%)
Query: 1 MSGYVNQKKFGGDTPYSFMFGPDICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFY 60
+S V+Q KFGGDTPYS MFGPDICG TKK+H IL+Y G N+ IKK++ CETD+LTH Y
Sbjct: 116 LSDDVDQTKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNHLIKKEVPCETDQLTHVY 175
Query: 61 TFILRPDASYSLLVDNREREFGSMYTDWDILPPRKIKESNAKKPKDWDDREYIEDPDEVK 120
TF+LRPDA+YS+L+DN E++ GS+Y+DWD+LP +KIK+ +AKKP+DWDD+EYI DP++ K
Sbjct: 176 TFVLRPDATYSILIDNVEKQTGSLYSDWDLLPAKKIKDPSAKKPEDWDDKEYIPDPEDTK 235
Query: 121 PEGYDSXXXXXXXXXXXXXXXXXXXXXGVWKPRMIPNPEYKGRWKRKKIKNPNYKGKWKI 180
P GYD G W IPNPEY G WK KKIKNP YKGKWK
Sbjct: 236 PAGYDDIPKEIPDTDAKKPEDWDDEEDGEWTAPTIPNPEYNGEWKPKKIKNPAYKGKWKA 295
Query: 181 PWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARSVVDEV 235
P IDNPEF+DDP+LYV L+YVG+E+WQVK+GS+FDN+L+ DDPEYA+ + +E
Sbjct: 296 PMIDNPEFKDDPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEET 350
>AT5G61790.1 | chr5:24827394-24829642 REVERSE LENGTH=531
Length = 530
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 128/269 (47%), Gaps = 49/269 (18%)
Query: 10 FGGDTPYSFMFGPDICGDQTKKLHLILSYQGQ------NYPIKKDLKCETDKLTHFYTFI 63
F ++PYS MFGPD CG T K+H IL ++ + +K DKL+H YT I
Sbjct: 128 FDSESPYSIMFGPDKCGG-TNKVHFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAI 186
Query: 64 LRPDASYSLLVDNREREFGSMYTDWD----ILPPRKIKESNAKKPKDWDDREYIEDPDEV 119
L+PD +LVD E++ ++ + D ++P + I + KKP+DWD+R I DP+ V
Sbjct: 187 LKPDNEVRILVDGEEKKKANLLSGEDFEPALIPAKTIPDPEDKKPEDWDERAKIPDPNAV 246
Query: 120 KPEGYDSXXXXXXXXXXXXXXXX--------------------XXXXXGVWKPRMIPNPE 159
KPE +D G+W+ I NP+
Sbjct: 247 KPEDWDEDAPMEIEDEEAEKPEGWLDDEPEEVDDPEATKPEDWDDEEDGMWEAPKIDNPK 306
Query: 160 YK-----GRWKRKKIKNPNYKGKWKIPWIDNPEFED--------DPDLYVL-----KPLQ 201
+ G WKR +NP YKGKW P IDNP ++ +PD + L +P+
Sbjct: 307 CEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFELDRPDYEPIA 366
Query: 202 YVGIEVWQVKAGSVFDNILICDDPEYARS 230
+GIE+W ++ G +FDNILI D + A +
Sbjct: 367 AIGIEIWTMQDGILFDNILIAKDEKVAET 395
>AT5G07340.2 | chr5:2317300-2319458 FORWARD LENGTH=541
Length = 540
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 126/280 (45%), Gaps = 56/280 (20%)
Query: 2 SGYVNQKKFGGDTPYSFMFGPDICGDQTKKLHLILSYQGQ------NYPIKKDLKCETDK 55
+G+V Q F D+PYS MFGPD CG T K+H IL ++ + +K D
Sbjct: 131 AGWVPQG-FDNDSPYSIMFGPDKCG-ATNKVHFILKHKNPKSGEFVEHHLKFPPSVPFDM 188
Query: 56 LTHFYTFILRPDASYSLLVDNREREFGSMYTDWDILPP---------------------R 94
L+H YT +L+ D +LVD E++ G++ + D PP
Sbjct: 189 LSHVYTAVLKSDNEVRILVDGEEKKKGNLLSAEDFEPPLIPSKTIPDPEDKKPEDWDERA 248
Query: 95 KIKESNAKKPKDWDDRE--YIEDPDEVKPEGY--------------------DSXXXXXX 132
KI + NA KP DWD+ IED + KPEG+ D
Sbjct: 249 KIPDPNAVKPDDWDEDAPMEIEDEEAEKPEGWLDDEPVEVEDPEASKPEDWDDEEDGEWE 308
Query: 133 XXXXXXXXXXXXXXXGVWKPRMIPNPEYKGRWKRKKIKNPNYKGKWKIPWIDNPE-FE-D 190
G WK M NP YKG+W I NP YKG WK I NP+ FE +
Sbjct: 309 APKVSNTKCEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFELE 368
Query: 191 DPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARS 230
P+ L+P+ +GIE+W ++ G +FDNILI D + A +
Sbjct: 369 RPN---LEPIAAIGIEIWTMQDGILFDNILISKDEKVAET 405
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.141 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,975,130
Number of extensions: 261094
Number of successful extensions: 602
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 5
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)