Os05g0480600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0480600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.36 | 0.459 | 9.36 | -0.416 | 1.51 | 0.889 | 0.0156 | 1.23 | -0.0232 | 5.75 | 27.36 | 1284 | -- | -- |
| 95.59 | 0.455 | 9.4 | -0.673 | 1.52 | 1.05 | -0.000728 | -- | -0.0829 | 5.79 | 27.06 | 1263 | -- | -- |
| 95.34 | 0.455 | 9.36 | -0.406 | 1.51 | 0.895 | -- | 1.26 | -0.032 | 5.77 | 27.14 | 1273 | -- | -- |
| 95.54 | 0.455 | 9.4 | -0.703 | 1.52 | 1.04 | -- | -- | -0.0871 | 5.79 | 27.1 | 1265 | -- | -- |
| 212.17 | 0.678 | 9.38 | -0.283 | -- | 1 | -- | 1.76 | -0.0201 | -- | 26.21 | 1300 | -- | -- |
| 141.72 | 0.558 | 9.4 | -0.386 | 1.59 | -- | 0.249 | -- | -0.0919 | 5.42 | -- | -- | -- | -- |
| 141.87 | 0.558 | 9.4 | -0.385 | 1.59 | -- | -- | -- | -0.0929 | 5.42 | -- | -- | -- | -- |
| 212.08 | 0.678 | 9.42 | -0.716 | -- | 1.17 | -- | -- | -0.0372 | -- | 27.6 | 5626 | -- | -- |
| 107.64 | 0.483 | 9.36 | -- | 1.56 | 0.904 | -- | -- | 0.0172 | 5.73 | 27.94 | 1273 | -- | -- |
| 274.35 | 0.774 | 9.42 | -0.332 | -- | -- | -- | -- | -0.0537 | -- | -- | -- | -- | -- |
| 145.79 | 0.565 | 9.39 | -- | 1.59 | -- | -- | -- | -0.05 | 5.43 | -- | -- | -- | -- |
| 223.94 | 0.697 | 9.37 | -- | -- | 0.992 | -- | -- | 0.165 | -- | 29.53 | 5630 | -- | -- |
| 277.25 | 0.777 | 9.42 | -- | -- | -- | -- | -- | -0.0169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.52 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 15 | 89.56 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 17 | 89.56 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 20 | 89.56 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 23 | 89.57 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 29 | 89.79 | temperature | 30 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 119 | 90.18 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 123 | 90.24 | temperature | 30 | 14400 | > th | dose dependent | sin | 13 | NA |
| 125 | 90.25 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 187 | 90.69 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 233 | 90.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 236 | 90.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 14 |
| 237 | 90.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 16 |
| 240 | 90.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 391 | 91.36 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 395 | 91.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 396 | 91.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 427 | 91.44 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 454 | 91.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 14 |
| 457 | 91.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 458 | 91.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 21 |
| 467 | 91.63 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 468 | 91.63 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 863 | 92.37 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |