BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0480600 Os05g0480600|AK102461
(590 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08670.1 | chr3:2633946-2636536 FORWARD LENGTH=568 157 2e-38
AT2G40070.1 | chr2:16728378-16731160 REVERSE LENGTH=608 81 1e-15
AT3G51540.1 | chr3:19115342-19117210 FORWARD LENGTH=439 63 4e-10
AT3G09000.1 | chr3:2746014-2748326 FORWARD LENGTH=542 51 2e-06
>AT3G08670.1 | chr3:2633946-2636536 FORWARD LENGTH=568
Length = 567
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 151/276 (54%), Gaps = 41/276 (14%)
Query: 327 RPLDIPDFPNETPPNLRTKLPERPLSAGRSRPGMALGVRSTSNTEPSAASAPVKKVSVPA 386
+P+ + DFP +TPPNLRT LP+RP+SAGRSRP +G S + P ++ S P
Sbjct: 321 QPIVLADFPLDTPPNLRTSLPDRPISAGRSRP---VGGSSMAKASPEPKGPITRRNSSPI 377
Query: 387 MSRSKFSDAPSRTPTLTNGRQ-------NRQSERSTVDSQPS-KVSRPATGTDNGFGMTM 438
++R + ++ + NG+ R S S + S+ + K S T +NG G +
Sbjct: 378 VTRGRLTETQGKGRFGGNGQHLTDAPEPRRISNVSDITSRRTVKTSTTVTDNNNGLGRSF 437
Query: 439 SKKSLDMAIRHMDIRQ---NLGGIRGASLFPHSIRSTAGKGRPARMSDPGHTISNGDHRH 495
SK SLDMAIRHMDIR N + +LFP SIR + K +P R + +
Sbjct: 438 SKSSLDMAIRHMDIRNGKTNGCALSTTTLFPQSIRPASSKIQPIRSGN-----------N 486
Query: 496 YADNGSTNGHFSGDSNGALSRNGGSSTDSPDRGSIGGKETLSELDMYGSSRYEAMLLRED 555
++D+ S+NG +G+ R + GK LS++DMY SSRY+A+LL+ED
Sbjct: 487 HSDSISSNGTENGNEANEGRR-------------LMGK--LSDMDMYESSRYDALLLKED 531
Query: 556 VRNTSWLHGFDDSKPDQSPLFDH-RFEPLPEPFSPL 590
V+NT+WLH DD D +FD+ FE LPEPF+PL
Sbjct: 532 VKNTNWLHSIDDRSSDHGLMFDNGGFELLPEPFAPL 567
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 64/107 (59%), Gaps = 14/107 (13%)
Query: 2 EDLLG-AEVGKNDYDWLLTPPGTPRCPVLEVAEKTPSPNILPK-XXXXXXXXXXXXXXLS 59
+DLL AE GKNDYDWLLTPPGTP + + S PK LS
Sbjct: 85 DDLLSSAEGGKNDYDWLLTPPGTP------LGNDSHSSLAAPKIASSARASSASKASRLS 138
Query: 60 VSQTENGHSTAPTRPARSNSVTRPSIQSTLMSS--SNR--TAVLNTS 102
VSQ+E+G+ ++ RPARS+SVTRPSI ++ SS S R +++LNTS
Sbjct: 139 VSQSESGYHSS--RPARSSSVTRPSISTSQYSSFTSGRSPSSILNTS 183
>AT2G40070.1 | chr2:16728378-16731160 REVERSE LENGTH=608
Length = 607
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 98/204 (48%), Gaps = 63/204 (30%)
Query: 327 RPLDIPDFPNETPPNLRTKLPERPLSAGRSRPGMALGVRSTS--------------NTEP 372
+P D+P F ETPPNLRT LPERPLSA R RPG A RS S + P
Sbjct: 372 KPSDMPGFSLETPPNLRTTLPERPLSATRGRPG-APSSRSGSVEPGGPPGGRPRRQSCSP 430
Query: 373 SAASAPVKK--VSVPAMSR--SKFSD---------------------APSRTPTLTNGRQ 407
S AP+ SVPA++R SK SD AP R+ +
Sbjct: 431 SRGRAPMYSSGSSVPAVNRGYSKASDNVSPVMMGTKMVERVINMRKLAPPRSDDKGSPHG 490
Query: 408 NRQSERSTVDSQPSKVSRPATGTDNGFGMTMSKKSLDMAIRHMDIRQNLGG--------I 459
N ++ S+ DS GFG T+SKKSLDMAIRHMDIR+ + G I
Sbjct: 491 NLSAKSSSPDSA-------------GFGRTLSKKSLDMAIRHMDIRRTIPGNLRPLMTNI 537
Query: 460 RGASLFPHSIRSTAGKGRPARMSD 483
+S++ S+RS +GRP +SD
Sbjct: 538 PASSMY--SVRSGHTRGRPMNVSD 559
>AT3G51540.1 | chr3:19115342-19117210 FORWARD LENGTH=439
Length = 438
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 40/162 (24%)
Query: 435 GMTMSKKSLDMAIRHMDIRQNLGGIRGAS-----LFPHSIRSTA-GKGRPARMSDPGHTI 488
G +S+ S+ MAI H+D+ +N G + + L+PHSIRS++ G +P S+ +
Sbjct: 311 GRKLSRASVQMAINHLDLARN-GKVSTHTFSSPMLYPHSIRSSSSGLRKPCGSSEGSCSS 369
Query: 489 SNGDHRHYADNGSTNGHFSGDSNGALSRNGGSSTDSPDRGSIGGKETLSELDMYGSSRYE 548
SN H ++G +L++ G ++ + D S+RY+
Sbjct: 370 SN----HEEEDGR-----------SLTKEGNNTENKND-----------------SARYD 397
Query: 549 AMLLREDVRNTSWLHGFDDSKPDQSPLFDHRFEPLPEPFSPL 590
A+L +DV++T+WL DD P QS +FD+ F+ P+ FSPL
Sbjct: 398 ALLNVKDVKDTNWLLNIDDESP-QSLIFDNAFDSPPDLFSPL 438
>AT3G09000.1 | chr3:2746014-2748326 FORWARD LENGTH=542
Length = 541
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 35/167 (20%)
Query: 327 RPLDIPDFPNETPPNLRTKLPERPLSAGRSRPGMAL--GVRSTS---------------- 368
+P ++P F E PPNLRT L +RP+SA R RPG+A G RS S
Sbjct: 296 KPPEMPGFSLEAPPNLRTTLADRPVSASRGRPGVASAPGSRSGSIERGGGPTSGGSGNAR 355
Query: 369 --NTEPSAASAPVKKVS---VPAMSRSKFSDAPSRTPTLT-NGRQNRQSERST------- 415
+ PS AP+ + R+K S+ S L+ N+ ER
Sbjct: 356 RQSCSPSRGRAPIGNTNGSLTGVRGRAKASNGGSGCDNLSPVAMGNKMVERVVNMRKLGP 415
Query: 416 --VDSQPSKVSRPATGTDNGFGM--TMSKKSLDMAIRHMDIRQNLGG 458
+ + S ++ N G +SK S+DMAIRHMDIR+ + G
Sbjct: 416 PRLTENGGRGSGKSSSAFNSLGYGRNLSKSSIDMAIRHMDIRRGMTG 462
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.125 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,080,640
Number of extensions: 394245
Number of successful extensions: 1415
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 6
Length of query: 590
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 486
Effective length of database: 8,255,305
Effective search space: 4012078230
Effective search space used: 4012078230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 114 (48.5 bits)