BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0480600 Os05g0480600|AK102461
(590 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0480600 Conserved hypothetical protein 838 0.0
Os01g0819000 Conserved hypothetical protein 387 e-107
AK073454 269 4e-72
Os01g0141900 Conserved hypothetical protein 76 7e-14
>Os05g0480600 Conserved hypothetical protein
Length = 590
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/590 (75%), Positives = 443/590 (75%)
Query: 1 MEDLLGAEVGKNDYDWLLTPPGTPRCPVLEVAEKTPSPNILPKXXXXXXXXXXXXXXLSV 60
MEDLLGAEVGKNDYDWLLTPPGTPRCPVLEVAEKTPSPNILPK LSV
Sbjct: 1 MEDLLGAEVGKNDYDWLLTPPGTPRCPVLEVAEKTPSPNILPKRTATRSSSTTRASRLSV 60
Query: 61 SQTENGHSTAPTRPARSNSVTRPSIQSTLMSSSNRTAVLNTSIXXXXXXXXXXXXXXXXX 120
SQTENGHSTAPTRPARSNSVTRPSIQSTLMSSSNRTAVLNTSI
Sbjct: 61 SQTENGHSTAPTRPARSNSVTRPSIQSTLMSSSNRTAVLNTSISSVSSRPTTPSRRSSTV 120
Query: 121 XAPKQSIAASRPVPAXXXXXXXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXQNX 180
APKQSIAASRPVPA Q QN
Sbjct: 121 VAPKQSIAASRPVPARSSTPVKTRPSTPTKTRPSTPVRTRQTANSTSDSAAARTTSAQNS 180
Query: 181 XXXXXXXXXXAMPNSSSGAIPAMSRPGASTISATSRSNASTISATSRPGSSSSNVPGIXX 240
AMPNSSSGAIPAMSRPGASTISATSRSNASTISATSRPGSSSSNVPGI
Sbjct: 181 RPSTPTSRSRAMPNSSSGAIPAMSRPGASTISATSRSNASTISATSRPGSSSSNVPGISR 240
Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXQPAMRSSAPAVGRXXXXXXXXXXXXXXXXINRPAAN 300
QPAMRSSAPAVGR INRPAAN
Sbjct: 241 ATSLSSSTVPSMSRSSSRSSTPTRQPAMRSSAPAVGRSPSVGRSSSISSLTSSINRPAAN 300
Query: 301 GGRNXXXXXXXXXXXXXXXXXXXXXVRPLDIPDFPNETPPNLRTKLPERPLSAGRSRPGM 360
GGRN VRPLDIPDFPNETPPNLRTKLPERPLSAGRSRPGM
Sbjct: 301 GGRNSAPSSAPSSRPSSPGPRPRAPVRPLDIPDFPNETPPNLRTKLPERPLSAGRSRPGM 360
Query: 361 ALGVRSTSNTEPSAASAPVKKVSVPAMSRSKFSDAPSRTPTLTNGRQNRQSERSTVDSQP 420
ALGVRSTSNTEPSAASAPVKKVSVPAMSRSKFSDAPSRTPTLTNGRQNRQSERSTVDSQP
Sbjct: 361 ALGVRSTSNTEPSAASAPVKKVSVPAMSRSKFSDAPSRTPTLTNGRQNRQSERSTVDSQP 420
Query: 421 SKVSRPATGTDNGFGMTMSKKSLDMAIRHMDIRQNLGGIRGASLFPHSIRSTAGKGRPAR 480
SKVSRPATGTDNGFGMTMSKKSLDMAIRHMDIRQNLGGIRGASLFPHSIRSTAGKGRPAR
Sbjct: 421 SKVSRPATGTDNGFGMTMSKKSLDMAIRHMDIRQNLGGIRGASLFPHSIRSTAGKGRPAR 480
Query: 481 MSDPGHTISNGDHRHYADNGSTNGHFSGDSNGALSRNGGSSTDSPDRGSIGGKETLSELD 540
MSDPGHTISNGDHRHYADNGSTNGHFSGDSNGALSRNGGSSTDSPDRGSIGGKETLSELD
Sbjct: 481 MSDPGHTISNGDHRHYADNGSTNGHFSGDSNGALSRNGGSSTDSPDRGSIGGKETLSELD 540
Query: 541 MYGSSRYEAMLLREDVRNTSWLHGFDDSKPDQSPLFDHRFEPLPEPFSPL 590
MYGSSRYEAMLLREDVRNTSWLHGFDDSKPDQSPLFDHRFEPLPEPFSPL
Sbjct: 541 MYGSSRYEAMLLREDVRNTSWLHGFDDSKPDQSPLFDHRFEPLPEPFSPL 590
>Os01g0819000 Conserved hypothetical protein
Length = 579
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/326 (63%), Positives = 232/326 (71%), Gaps = 4/326 (1%)
Query: 265 QPAMRSSAPAVGRXXXXXXXXXXXXXXXXINRPAANGGRNXXXXXXXXXXXXXXXXXXXX 324
QP RSSAP G I RP + GR+
Sbjct: 258 QPITRSSAPLAGHSPSVGRIFGSNNITS-IGRPVTSNGRSSAPSSAPSSRPSSPNSRARA 316
Query: 325 XVRPLDIPDFPNETPPNLRTKLPERPLSAGRSRPGMALGVRSTSNTEPSAASAPVKKVSV 384
VRPLDIPDFP+ETPPNLRTKLP+RPLSAGR+RPG+ LG +S N E SAPVKK++V
Sbjct: 317 PVRPLDIPDFPSETPPNLRTKLPQRPLSAGRARPGVGLGPKSAPNAE-QVRSAPVKKMTV 375
Query: 385 PAMSRSKFSDAPSRTPTLTNGRQNRQSERSTVDSQPSKVSRPATGTDNGFGMTMSKKSLD 444
PA++RSKF DAPSR +LTNG Q+RQSE S V+ Q +K R TGTDNGFG T+S+KSLD
Sbjct: 376 PAITRSKFPDAPSRVSSLTNGHQSRQSEGSAVEGQHTKPLRSITGTDNGFGRTISRKSLD 435
Query: 445 MAIRHMDIRQNLGGIRGASLFPHSIRSTAGKGRPARMSDPGHTISNGDHRHYADNGSTNG 504
MAI+HMDIRQNLGGIRGASLFP SIRS K R ARMSDP H NGD H+ DNGS NG
Sbjct: 436 MAIKHMDIRQNLGGIRGASLFPPSIRSAGAKVRSARMSDPAHLSLNGDC-HFTDNGSING 494
Query: 505 HFSGDSNGALSRNGGSSTDSPDRGSIGGKETLSELDMYGSSRYEAMLLREDVRNTSWLHG 564
HFSGDSNG LS NGGSST SPDR SIG KETLSELD+Y ++RYEA+LLRED+ NT+WLH
Sbjct: 495 HFSGDSNGTLSNNGGSSTGSPDRESIGTKETLSELDLYTTARYEALLLREDITNTNWLHN 554
Query: 565 FDDSKPDQSPLFDHRFEPLPEPFSPL 590
DD K DQSP+FDHRFEPLPEPF PL
Sbjct: 555 VDD-KSDQSPVFDHRFEPLPEPFGPL 579
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 1 MEDLLGAEVGKNDYDWLLTPPGTPRCPVLEVAEKTPSPNILPKXXXXXXXXXXXXXXLSV 60
MEDLL E+GK+DYDWLLTPPG+P P+LEV EK PS ++ PK LS+
Sbjct: 1 MEDLLDTEIGKHDYDWLLTPPGSPHAPILEVVEKAPSSDV-PKRITTRSSSTTRASRLSI 59
Query: 61 SQTENGHSTAPTRPARSNSVTRPSIQSTLMSSSNRTAVLNTSIXXXXXXXXXXXXXXXXX 120
+TENGHST PTRPARSNSV+RPSIQSTL+SS+NR++V+N SI
Sbjct: 60 PETENGHSTVPTRPARSNSVSRPSIQSTLISSNNRSSVVNASISSVCSPPTTPSKRTSTL 119
Query: 121 XAPKQSIAASRPVP 134
+ K S+ ASR VP
Sbjct: 120 SSSKPSVPASRQVP 133
>AK073454
Length = 570
Score = 269 bits (688), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/255 (59%), Positives = 171/255 (67%), Gaps = 3/255 (1%)
Query: 265 QPAMRSSAPAVGRXXXXXXXXXXXXXXXXINRPAANGGRNXXXXXXXXXXXXXXXXXXXX 324
QP RSSAP G I RP + GR+
Sbjct: 258 QPITRSSAPLAGHSPSVGRIFGSNNITS-IGRPVTSNGRSSAPSSAPSSRPSSPNSRARA 316
Query: 325 XVRPLDIPDFPNETPPNLRTKLPERPLSAGRSRPGMALGVRSTSNTEPSAASAPVKKVSV 384
VRPLDIPDFP+ETPPNLRTKLP+RPLSAGR+RPG+ LG +S N E SAPVKK++V
Sbjct: 317 PVRPLDIPDFPSETPPNLRTKLPQRPLSAGRARPGVGLGPKSAPNAE-QVRSAPVKKMTV 375
Query: 385 PAMSRSKFSDAPSRTPTLTNGRQNRQSERSTVDSQPSKVSRPATGTDNGFGMTMSKKSLD 444
PA++RSKF DAPSR +LTNG ++RQSE S V+ Q +K R TGTDNGFG T+S+KSLD
Sbjct: 376 PAITRSKFPDAPSRVSSLTNGHRSRQSEGSAVEGQHTKPLRSITGTDNGFGRTISRKSLD 435
Query: 445 MAIRHMDIRQNLGGIRGASLFPHSIRSTAGKGRPARMSDPGHTISNGDHRHYADNGSTNG 504
MAI+HMDIRQNLGGIRGASLFP SIRS K R ARMSDP H NGD H+ DNGS NG
Sbjct: 436 MAIKHMDIRQNLGGIRGASLFPPSIRSAGAKVRSARMSDPAHLSLNGDC-HFTDNGSING 494
Query: 505 HFSGDSNGALSRNGG 519
HFSGDSNG LS NGG
Sbjct: 495 HFSGDSNGTLSNNGG 509
Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 1 MEDLLGAEVGKNDYDWLLTPPGTPRCPVLEVAEKTPSPNILPKXXXXXXXXXXXXXXLSV 60
MEDLL E+GK+DYDWLLTPPG+P P+LEV EK PS ++ PK LS+
Sbjct: 1 MEDLLDTEIGKHDYDWLLTPPGSPHAPILEVVEKAPSSDV-PKRITTRSSSTTRASRLSI 59
Query: 61 SQTENGHSTAPTRPARSNSVTRPSIQSTLMSSSNRTAVLNTSIXXXXXXXXXXXXXXXXX 120
+TENGHST PTRPARSNSV+RPSIQSTL+SS+NR++V+N SI
Sbjct: 60 PETENGHSTVPTRPARSNSVSRPSIQSTLISSNNRSSVVNASISSVCSPPTTPSKRTSTL 119
Query: 121 XAPKQSIAASRPVP 134
+ K S+ ASR VP
Sbjct: 120 SSSKPSVPASRQVP 133
>Os01g0141900 Conserved hypothetical protein
Length = 606
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 104/212 (49%), Gaps = 45/212 (21%)
Query: 327 RPLDIPDFPNETPPNLRTKLPERPLSAGRSRPGMALGVRSTSNTEPSAASAPVKK----- 381
+P ++P F + PPNLRT LPERP SA R RPG A RS+S EP A+ P ++
Sbjct: 377 KPSEMPGFSLDAPPNLRTSLPERPTSATRGRPG-APSSRSSS-VEPGPAARPRRQSCSPS 434
Query: 382 ------------VSVPAMSRSKFSDAPSRTPT---------LTNGRQ----NRQSERSTV 416
SVPA+ RS + S P + N R+ +RS++
Sbjct: 435 RGRTLNGSVPSGSSVPAVRRSHLNSGDSVNPVQMGNKMVERVVNMRRLVPPKHDDQRSSL 494
Query: 417 DSQPSKVSRPATGTDNGFGMTMSKKSLDMAIRHMDIRQN--------LGGIRGASLFPHS 468
+ K S + +GFG T+SKKSLDMA+RHMDIR++ + I +S+ HS
Sbjct: 495 NGLSGKSSN--SPDSSGFGRTLSKKSLDMALRHMDIRRSIPNNLRPLMTSIPASSV--HS 550
Query: 469 IRSTAGKGRPARMSD-PGHTISNGDHRHYADN 499
RS + + RP +SD P T SN +N
Sbjct: 551 ARSGSTRSRPISVSDSPLATSSNASSEPSVNN 582
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.125 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,295,742
Number of extensions: 704641
Number of successful extensions: 2844
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2818
Number of HSP's successfully gapped: 6
Length of query: 590
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 484
Effective length of database: 11,501,117
Effective search space: 5566540628
Effective search space used: 5566540628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 159 (65.9 bits)