FiT-DB / Search/ Help/ Sample detail

Os05g0472300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribonuclease P subunit family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.53 (0.016) R2 : 0.0592
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.181 (0.0337) R2dN8 : 0.0764 R2N8 : 0.0592
σ : 0.302
deviance : 41.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.03 0.23 9.53 0.156 0.478 0.56 0.189 -0.091 0.225 0.0542 80 1375 -- --
24.04 0.228 9.53 0.149 0.48 0.555 0.19 -- 0.223 0.0629 79.98 1371 -- --
24.18 0.229 9.53 0.15 0.481 0.553 -- -0.1 0.225 0.0748 79.98 1365 -- --
24.19 0.229 9.53 0.141 0.481 0.549 -- -- 0.223 0.0823 79.89 1365 -- --
35.38 0.279 9.53 0.143 -- 0.228 -- 0.0789 0.199 -- 80 1608 -- --
27.83 0.247 9.54 0.13 0.462 -- 0.146 -- 0.191 23.8 -- -- -- --
27.92 0.247 9.54 0.124 0.461 -- -- -- 0.19 23.9 -- -- -- --
35.26 0.278 9.53 0.158 -- 0.233 -- -- 0.187 -- 78.32 3110 -- --
24.72 0.232 9.53 -- 0.475 0.533 -- -- 0.208 0.0756 80 1379 -- --
41.3 0.3 9.53 0.138 -- -- -- -- 0.196 -- -- -- -- --
28.33 0.249 9.54 -- 0.462 -- -- -- 0.176 23.9 -- -- -- --
35.92 0.28 9.53 -- -- 0.23 -- -- 0.17 -- 78.32 3110 -- --
41.8 0.302 9.53 -- -- -- -- -- 0.181 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.09 radiation 1.0 30 < th dose dependent sin 12 NA
4 23.28 radiation 1.0 30 < th dose independent sin 12 NA
5 23.30 radiation 1.0 30 > th dose independent sin 12 NA
19 23.85 radiation 1.0 30 > th dose independent rect. 14 19
21 23.91 humidity 50.0 720 > th dose dependent rect. 17 10
25 23.97 humidity 60.0 720 > th dose dependent rect. 17 4
26 23.98 humidity 60.0 720 > th dose dependent rect. 18 1
33 24.04 humidity 80.0 1440 > th dose independent rect. 2 20
37 24.06 humidity 80.0 1440 > th dose independent rect. 5 17
39 24.06 humidity 80.0 1440 < th dose independent rect. 2 19
43 24.07 humidity 80.0 1440 < th dose independent rect. 4 17
46 24.08 humidity 80.0 1440 < th dose independent rect. 6 15
57 24.10 radiation 1.0 30 > th dose independent rect. 16 17
72 24.12 humidity 80.0 1440 > th dose independent rect. 10 22
86 24.14 radiation 1.0 270 < th dose dependent rect. 5 22
92 24.15 humidity 80.0 1440 < th dose independent rect. 10 23
101 24.16 humidity 80.0 1440 > th dose independent rect. 17 23
105 24.17 humidity 80.0 720 < th dose independent rect. 19 2
123 24.18 humidity 80.0 1440 > th dose independent rect. 6 21
132 24.18 humidity 80.0 1440 < th dose independent rect. 17 23
133 24.18 humidity 80.0 1440 < th dose independent rect. 19 23
135 24.19 humidity 80.0 1440 > th dose independent rect. 10 12
143 24.19 radiation 1.0 270 > th dose independent rect. 12 19
180 24.20 temperature 25.0 1440 > th dose dependent rect. 15 1
181 24.21 humidity 80.0 1440 > th dose independent no NA NA
182 24.21 humidity 80.0 1440 < th dose independent no NA NA
185 24.21 humidity 80.0 1440 < th dose independent rect. 19 21
193 24.21 temperature 25.0 1440 > th dose dependent rect. 14 5
198 24.22 precipitation 0.1 270 < th dose independent rect. 13 18
215 24.22 precipitation 0.1 270 < th dose dependent rect. 13 18
216 24.22 humidity 90.0 1440 < th dose dependent rect. 11 20
237 24.24 humidity 50.0 1440 > th dose dependent rect. 11 17
241 24.25 humidity 80.0 1440 < th dose independent sin 22 NA
243 24.25 humidity 80.0 1440 > th dose independent rect. 14 23
244 24.25 humidity 80.0 1440 < th dose independent rect. 14 23
249 24.25 wind 5.0 10 < th dose dependent rect. 5 4
269 24.27 humidity 80.0 1440 > th dose independent sin 21 NA
272 24.27 humidity 80.0 1440 < th dose independent rect. 10 11
275 24.27 radiation 1.0 30 > th dose independent rect. 12 21
283 24.27 radiation 1.0 10 < th dose dependent rect. 20 21
286 24.28 humidity 70.0 720 > th dose independent rect. 15 13
292 24.28 humidity 90.0 720 < th dose dependent rect. 19 3
307 24.29 humidity 90.0 1440 < th dose dependent rect. 11 11
349 24.31 radiation 1.0 10 < th dose independent rect. 20 12
357 24.31 humidity 50.0 1440 > th dose dependent sin 17 NA
359 24.31 humidity 90.0 1440 < th dose dependent sin 17 NA
365 24.31 humidity 50.0 1440 > th dose dependent rect. 11 11
387 24.32 radiation 1.0 10 < th dose dependent rect. 20 10
397 24.33 radiation 1.0 10 < th dose independent rect. 20 10
409 24.33 humidity 80.0 1440 < th dose dependent sin 14 NA
433 24.34 humidity 80.0 1440 > th dose independent rect. 9 18
450 24.34 radiation 1.0 10 < th dose dependent rect. 20 12
472 24.35 humidity 70.0 720 > th dose independent rect. 15 5
473 24.35 humidity 70.0 720 > th dose independent rect. 17 11
491 24.35 humidity 70.0 1440 > th dose dependent rect. 9 13
505 24.35 humidity 50.0 1440 > th dose dependent rect. 1 21
507 24.36 radiation 1.0 10 > th dose independent rect. 5 4
510 24.36 humidity 70.0 1440 > th dose independent rect. 13 7
513 24.36 humidity 70.0 1440 > th dose independent rect. 13 9
557 24.36 humidity 80.0 720 < th dose dependent rect. 18 14
591 24.37 humidity 80.0 720 < th dose dependent rect. 18 9
592 24.37 humidity 50.0 10 > th dose dependent rect. 19 10
617 24.37 humidity 90.0 1440 < th dose dependent rect. 1 21
628 24.38 radiation 1.0 10 < th dose independent rect. 20 20
636 24.38 humidity 80.0 720 < th dose dependent rect. 18 7
677 24.38 humidity 50.0 1440 > th dose dependent rect. 17 23
682 24.39 humidity 80.0 720 > th dose independent rect. 18 3
695 24.39 humidity 50.0 1440 > th dose dependent no NA NA
738 24.39 humidity 50.0 1440 > th dose dependent rect. 5 22
747 24.39 humidity 90.0 1440 < th dose dependent rect. 17 23
758 24.40 humidity 90.0 1440 < th dose dependent no NA NA
774 24.40 temperature 25.0 1440 > th dose dependent rect. 13 18
797 24.41 precipitation 0.1 270 < th dose independent rect. 3 14
823 24.41 precipitation 0.1 270 < th dose dependent rect. 3 14
842 24.41 humidity 90.0 1440 < th dose dependent rect. 4 23
925 24.43 wind 3.0 90 < th dose dependent rect. 4 5
969 24.43 humidity 50.0 1440 > th dose dependent rect. 14 23