BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0472300 Os05g0472300|AK071966
         (316 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0472300  Ribonuclease P subunit family protein               615   e-176

>Os05g0472300 Ribonuclease P subunit family protein
          Length = 316

 Score =  615 bits (1586), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 300/316 (94%), Positives = 300/316 (94%)

Query: 1   MSTISDQKKRTLEALQQRYAAAKAKKLQDKPRCQTRNKDSAPKPNLDASRKGKAPDFIPS 60
           MSTISDQKKRTLEALQQRYAAAKAKKLQDKPRCQTRNKDSAPKPNLDASRKGKAPDFIPS
Sbjct: 1   MSTISDQKKRTLEALQQRYAAAKAKKLQDKPRCQTRNKDSAPKPNLDASRKGKAPDFIPS 60

Query: 61  RTSAPFPXXXXXXXXXXXXXXXXETNPVYSELSFAPHDNLLQRSISDLDSMDVVHNVVYD 120
           RTSAPFP                ETNPVYSELSFAPHDNLLQRSISDLDSMDVVHNVVYD
Sbjct: 61  RTSAPFPSKKGLAISSSSASSGGETNPVYSELSFAPHDNLLQRSISDLDSMDVVHNVVYD 120

Query: 121 IIQKGGDAGKITKGAKKLKLEKGILLDNYVHRGPRLVDAQAKSLLIHSKRSKRHMSLKQH 180
           IIQKGGDAGKITKGAKKLKLEKGILLDNYVHRGPRLVDAQAKSLLIHSKRSKRHMSLKQH
Sbjct: 121 IIQKGGDAGKITKGAKKLKLEKGILLDNYVHRGPRLVDAQAKSLLIHSKRSKRHMSLKQH 180

Query: 181 KKCGSFDLPETLRKFDLYKPMHEMWKEYITELTKSTPKKQLSETLLSADLHGALVIVAEC 240
           KKCGSFDLPETLRKFDLYKPMHEMWKEYITELTKSTPKKQLSETLLSADLHGALVIVAEC
Sbjct: 181 KKCGSFDLPETLRKFDLYKPMHEMWKEYITELTKSTPKKQLSETLLSADLHGALVIVAEC 240

Query: 241 KSASSYQGVCGIMIRDTAETFGIISDDNRFRVVPKAGSVFILQADCWKVTLIGDKLSPRE 300
           KSASSYQGVCGIMIRDTAETFGIISDDNRFRVVPKAGSVFILQADCWKVTLIGDKLSPRE
Sbjct: 241 KSASSYQGVCGIMIRDTAETFGIISDDNRFRVVPKAGSVFILQADCWKVTLIGDKLSPRE 300

Query: 301 KLKENQRQQRVQAQIR 316
           KLKENQRQQRVQAQIR
Sbjct: 301 KLKENQRQQRVQAQIR 316



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,815,690
Number of extensions: 383226
Number of successful extensions: 1195
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1194
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 215
Effective length of database: 11,762,187
Effective search space: 2528870205
Effective search space used: 2528870205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)