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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0457200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein phpsphatase 2C (PP2C) (EC 3.1.3.16).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.92 (0.0592) R2 : 0.779
β1 : 0.584 (0.226) R2dD : 0.00368 R2D : -0.0467
β2 : 3.8 (0.18) R2dC : 0.359 R2C : 0.563
β3 : -2.46 (0.238) R2dE : 0.0886 R2E : 0.27
β4 : -5.1 (0.74) R2dD*C : 0.0449 R2D*C : -0.032
β5 : -3.77 (0.894) R2dD*E : 0.0176 R2D*E : -0.0339
γ1 : 1.67 (0.127) R2dN8 : 0.114 R2N8 : 0.0692
σ : 1.11
deviance : 562.53
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C
peak time of C : 11.8
E
wheather : humidity
threshold : 69.96
memory length : 726
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 1.08

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
562.53 1.11 5.92 0.584 3.8 -2.46 -5.1 -3.77 1.67 11.8 69.96 726 19.1 1.08
584 1.13 5.94 0.298 3.73 -2.73 -3.07 -- 1.64 11.6 70.14 736 19 1.22
617.39 1.16 5.96 0.069 3.81 -2.6 -- 0.577 1.63 11.6 68.42 740 19.1 1.08
617.2 1.16 5.92 0.172 3.75 -2.61 -- -- 1.64 11.6 67.98 741 19.1 1.11
651.19 1.19 6.12 -0.246 -- -5.88 -- 1.43 1.35 -- 20.09 792 14.8 5.33
731.27 1.27 5.92 0.141 5.04 -- -2.4 -- 1.57 12.1 -- -- -- --
756.19 1.29 5.92 0.0458 5.05 -- -- -- 1.56 12.1 -- -- -- --
650.43 1.19 6.02 0.0606 -- -5.7 -- -- 1.63 -- 10.18 782 14.8 5.62
618.02 1.16 5.92 -- 3.71 -2.63 -- -- 1.63 11.6 67.78 738 19.1 1.15
2362.83 2.27 6.03 -0.114 -- -- -- -- 1.48 -- -- -- -- --
756.25 1.29 5.93 -- 5.05 -- -- -- 1.55 12.1 -- -- -- --
649.11 1.19 6 -- -- -5.72 -- -- 1.63 -- 6.358 785 14.7 5.74
2363.18 2.27 6.03 -- -- -- -- -- 1.5 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 569.24 humidity 70 720 > th dose dependent rect. 19 1
2 572.63 humidity 80 720 > th dose independent rect. 18 3
3 573.98 humidity 80 720 > th dose independent rect. 19 1
6 575.83 humidity 80 720 < th dose independent rect. 19 4
9 576.43 humidity 80 720 < th dose independent sin 15 NA
10 577.75 humidity 80 720 < th dose dependent rect. 19 5
14 578.34 humidity 80 720 < th dose independent rect. 18 6
18 580.01 humidity 80 720 < th dose dependent rect. 20 2
23 580.76 humidity 80 720 < th dose independent rect. 15 10
29 581.34 humidity 90 720 < th dose dependent rect. 18 14
64 586.53 humidity 80 720 < th dose independent rect. 15 17
80 588.32 humidity 90 720 < th dose dependent sin 12 NA
145 594.75 humidity 80 1440 < th dose independent rect. 18 22
150 595.10 humidity 80 1440 > th dose independent rect. 18 22
152 595.27 humidity 80 1440 > th dose independent rect. 13 21
165 596.14 humidity 80 1440 < th dose independent rect. 13 23
173 596.36 humidity 80 1440 > th dose independent rect. 24 22
174 596.38 humidity 80 1440 < th dose independent rect. 11 22
175 596.42 humidity 90 1440 < th dose dependent rect. 6 1
192 597.10 humidity 80 1440 < th dose independent rect. 23 23
201 597.39 humidity 80 1440 > th dose independent rect. 11 22
207 597.59 humidity 80 1440 < th dose independent rect. 6 22
230 598.30 humidity 80 1440 < th dose independent no NA NA
238 598.43 humidity 80 1440 > th dose independent rect. 6 22
262 598.94 humidity 80 1440 > th dose independent no NA NA
331 600.59 humidity 80 1440 > th dose independent rect. 21 23
395 602.24 humidity 50 1440 > th dose dependent rect. 6 1
413 602.63 humidity 50 1440 > th dose dependent rect. 15 17
452 603.74 humidity 80 720 > th dose independent sin 18 NA
455 603.75 wind 3 43200 < th dose dependent rect. 1 3
457 603.76 humidity 60 1440 > th dose dependent rect. 13 20
473 604.23 humidity 80 1440 > th dose independent rect. 18 16
482 604.50 humidity 70 1440 > th dose dependent rect. 18 22
545 605.76 humidity 80 1440 > th dose independent rect. 6 2
547 605.79 humidity 70 1440 > th dose dependent rect. 1 22
597 606.62 humidity 70 1440 > th dose dependent no NA NA
599 606.63 humidity 70 14400 < th dose independent rect. 18 4
611 606.69 humidity 90 1440 < th dose dependent rect. 5 3
618 606.74 humidity 70 1440 > th dose dependent rect. 22 23
640 606.96 humidity 70 1440 > th dose dependent rect. 5 23
663 607.42 humidity 80 1440 < th dose independent rect. 23 18
667 607.49 humidity 70 14400 > th dose independent rect. 19 4
670 607.51 humidity 70 14400 > th dose independent rect. 19 1
687 607.67 humidity 70 14400 > th dose independent rect. 19 10
750 608.47 radiation 20 1440 < th dose independent rect. 6 1
772 608.81 radiation 20 1440 > th dose independent rect. 6 1
808 609.10 humidity 50 1440 > th dose dependent sin 13 NA
830 609.62 humidity 80 1440 < th dose independent rect. 6 2
915 610.84 humidity 80 1440 > th dose independent rect. 24 17
928 610.98 radiation 20 14400 > th dose dependent rect. 16 15
933 611.08 humidity 80 1440 < th dose independent sin 4 NA