BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0457200 Os05g0457200|003-011-H10
(322 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G29380.1 | chr2:12608855-12610124 FORWARD LENGTH=363 147 6e-36
AT1G07430.1 | chr1:2281151-2282656 REVERSE LENGTH=443 145 3e-35
AT3G11410.1 | chr3:3584181-3585649 REVERSE LENGTH=400 139 3e-33
AT5G59220.1 | chr5:23894672-23896497 REVERSE LENGTH=414 127 6e-30
AT5G51760.1 | chr5:21026916-21028912 FORWARD LENGTH=417 96 2e-20
AT5G57050.1 | chr5:23087720-23089303 FORWARD LENGTH=424 93 2e-19
AT4G26080.1 | chr4:13220231-13221828 REVERSE LENGTH=435 89 4e-18
AT1G17550.1 | chr1:6034917-6036939 FORWARD LENGTH=512 73 2e-13
AT1G72770.1 | chr1:27390998-27392851 FORWARD LENGTH=512 69 3e-12
>AT2G29380.1 | chr2:12608855-12610124 FORWARD LENGTH=363
Length = 362
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 92/163 (56%), Gaps = 9/163 (5%)
Query: 90 PRYGVTSVFGRRREMEDAVSIRPDFLRGSTSSGKHHFFGVFDGHGCSHVARMCQDRMHEL 149
PRYGV+SV GRRREMEDAV+I P F S H+FGV+DGHGCSHVA C++R+H+L
Sbjct: 76 PRYGVSSVCGRRREMEDAVAIHPSFSSPKNSEFPQHYFGVYDGHGCSHVAARCRERLHKL 135
Query: 150 VVDAYXXXXXXXXXXXXXXXXXDVMEKGFARMDDEATIWAKSRTGGEPACRCELQTPARC 209
V + ME+ F RMD E W S C+C+LQTPA C
Sbjct: 136 VQEELSSDMEDEEEWKT------TMERSFTRMDKEVVSWGDSVVTAN--CKCDLQTPA-C 186
Query: 210 DHVGSTXXXXXXXXXXXXXXNSGDSRAVLCRAGVPVPLSVDHK 252
D VGST N GDSRAVLCR G PVPLS DHK
Sbjct: 187 DSVGSTAVVSVITPDKIVVANCGDSRAVLCRNGKPVPLSTDHK 229
>AT1G07430.1 | chr1:2281151-2282656 REVERSE LENGTH=443
Length = 442
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 95/165 (57%), Gaps = 13/165 (7%)
Query: 90 PRYGVTSVFGRRREMEDAVSIRPDFLRGST--SSGKHHFFGVFDGHGCSHVARMCQDRMH 147
PRYGV SV GRRR+MEDAV++ P F+R T S + H+FGV+DGHGCSHVA C++R+H
Sbjct: 119 PRYGVASVCGRRRDMEDAVALHPSFVRKQTEFSRTRWHYFGVYDGHGCSHVAARCKERLH 178
Query: 148 ELVVDAYXXXXXXXXXXXXXXXXXDVMEKGFARMDDEATIWAKSRTGGEPACRCELQTPA 207
ELV + +ME+ F RMD E W ++ CRCELQTP
Sbjct: 179 ELVQE--------EALSDKKEEWKKMMERSFTRMDKEVVRWGETVMSAN--CRCELQTPD 228
Query: 208 RCDHVGSTXXXXXXXXXXXXXXNSGDSRAVLCRAGVPVPLSVDHK 252
CD VGST N GDSRAVLCR G VPLS DHK
Sbjct: 229 -CDAVGSTAVVSVITPEKIIVANCGDSRAVLCRNGKAVPLSTDHK 272
>AT3G11410.1 | chr3:3584181-3585649 REVERSE LENGTH=400
Length = 399
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 97/169 (57%), Gaps = 17/169 (10%)
Query: 90 PRYGVTSVFGRRREMEDAVSIRPDFLRGSTSSGKHHFFGVFDGHGCSHVARMCQDRMHEL 149
P+ G TSV GRRR+MEDAVSI P FL+ +S HHF+GVFDGHGCSHVA C++R+H++
Sbjct: 103 PKIGTTSVCGRRRDMEDAVSIHPSFLQ--RNSENHHFYGVFDGHGCSHVAEKCRERLHDI 160
Query: 150 VVDAYXXXXXXXXXXXXXXXXXDVMEKGFARMDDEAT------IWAKSRTGGEPACRCEL 203
V + M K F +MD E + + + + +CRCEL
Sbjct: 161 V--------KKEVEVMASDEWTETMVKSFQKMDKEVSQRECNLVVNGATRSMKNSCRCEL 212
Query: 204 QTPARCDHVGSTXXXXXXXXXXXXXXNSGDSRAVLCRAGVPVPLSVDHK 252
Q+P +CD VGST N GDSRAVLCR GV +PLSVDHK
Sbjct: 213 QSP-QCDAVGSTAVVSVVTPEKIIVSNCGDSRAVLCRNGVAIPLSVDHK 260
>AT5G59220.1 | chr5:23894672-23896497 REVERSE LENGTH=414
Length = 413
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 89/166 (53%), Gaps = 16/166 (9%)
Query: 89 WPRYGVTSVFGRRREMEDAVSIRPDFLRGST--SSGKHHFFGVFDGHGCSHVARMCQDRM 146
+P+YGV SV GRRREMEDAV++ P F R T SS H+ GV+DGHGCSHVA C++R+
Sbjct: 109 YPKYGVASVCGRRREMEDAVAVHPFFSRHQTEYSSTGFHYCGVYDGHGCSHVAMKCRERL 168
Query: 147 HELVVDAYXXXXXXXXXXXXXXXXXDVMEKGFARMDDEATIWAKSRTGGEPACRCELQTP 206
HELV + + M + F RMD E G CRCELQ P
Sbjct: 169 HELVREEFEADADWEKS----------MARSFTRMDMEVVAL---NADGAAKCRCELQRP 215
Query: 207 ARCDHVGSTXXXXXXXXXXXXXXNSGDSRAVLCRAGVPVPLSVDHK 252
CD VGST N GDSRAVLCR G + LS DHK
Sbjct: 216 -DCDAVGSTAVVSVLTPEKIIVANCGDSRAVLCRNGKAIALSSDHK 260
>AT5G51760.1 | chr5:21026916-21028912 FORWARD LENGTH=417
Length = 416
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 90 PRYGVTSVFGRRREMEDAVSIRPDFLRGSTSSGKH-HFFGVFDGHGCSHVARMCQDRMHE 148
P YG+ SV GR R+MED+V+++P+ + + + HFF V+DGHG S V+ +C MH
Sbjct: 107 PLYGIVSVMGRSRKMEDSVTVKPNLCKPEVNRQRPVHFFAVYDGHGGSQVSTLCSTTMHT 166
Query: 149 LVVDAYXXXXXXXXXXXXXXXXX----DVMEKGFARMDDEATIWAKSRTGGEPACRCELQ 204
V + VM++ F RMD+ AT T P C C+
Sbjct: 167 FVKEELEQNLEEEEEGSENDVVERKWRGVMKRSFKRMDEMATSTCVCGTS-VPLCNCD-- 223
Query: 205 TPARCDHVGSTXXXXXXXXXXXXXXNSGDSRAVLCRAGVPVPLSVDHK 252
P GST N+GDSRAVLCR G+ +PLS DHK
Sbjct: 224 -PREAAISGSTAVTAVLTHDHIIVANTGDSRAVLCRNGMAIPLSNDHK 270
>AT5G57050.1 | chr5:23087720-23089303 FORWARD LENGTH=424
Length = 423
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 83/178 (46%), Gaps = 33/178 (18%)
Query: 90 PRYGVTSVFGRRREMEDAVSIRPDFLRGSTSS----------GKH---HFFGVFDGHGCS 136
P YGVTS+ GRR EMED+VS P FL+ S+SS H HFFGV+DGHG S
Sbjct: 111 PLYGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFFGVYDGHGGS 170
Query: 137 HVARMCQDRMHELVVDAYXXXXXXXXXXXXXXXXXDVMEK-GFARMDDEATIWAKSRTGG 195
VA C++RMH + + V EK F D W K+
Sbjct: 171 QVANYCRERMHLALTEEI------------------VKEKPEFCDGDTWQEKWKKALFNS 212
Query: 196 EPACRCELQTPARC-DHVGSTXXXXXXXXXXXXXXNSGDSRAVLCRAGVPVPLSVDHK 252
E++T A + VGST N GDSRAVLCR P+ LSVDHK
Sbjct: 213 FMRVDSEIETVAHAPETVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHK 270
>AT4G26080.1 | chr4:13220231-13221828 REVERSE LENGTH=435
Length = 434
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 90 PRYGVTSVFGRRREMEDAVSIRPDFLRGSTSS---------GKHHFFGVFDGHGCSHVAR 140
P YG TS+ GRR EMEDAVS P FL+ S+ S HFFGV+DGHG S VA
Sbjct: 127 PLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVAN 186
Query: 141 MCQDRMHELVVDAYXXXXXXXXXXXXXXXXXDVMEKGFARMDDEATIWAKSRTGGEPACR 200
C++RMH + + D W K+
Sbjct: 187 YCRERMHLALAEEIAKEKPM-----------------LCDGDTWLEKWKKALFNSFLRVD 229
Query: 201 CELQTPARCDHVGSTXXXXXXXXXXXXXXNSGDSRAVLCRAGVPVPLSVDHK 252
E+++ A + VGST N GDSRAVLCR +PLSVDHK
Sbjct: 230 SEIESVA-PETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHK 280
>AT1G17550.1 | chr1:6034917-6036939 FORWARD LENGTH=512
Length = 511
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 74/182 (40%), Gaps = 22/182 (12%)
Query: 90 PRYGVTSVFGRRREMEDAVSIRPDFLRGSTSS--GKH------------HFFGVFDGHGC 135
P +G S+ G R EMEDAV P FL+ G H HFFGV+DGHG
Sbjct: 187 PLWGTISICGGRSEMEDAVRALPHFLKIPIKMLMGDHEGMSPSLPYLTSHFFGVYDGHGG 246
Query: 136 SHVARMCQDRMHELVVDAYXXXXXXXXXXXXXXXXXDVMEKGFA----RMDDEAT-IWAK 190
+ VA C DR+H + + EK F ++DDE +
Sbjct: 247 AQVADYCHDRIHSALAEEIERIKEELCRRNTGEGRQVQWEKVFVDCYLKVDDEVKGKINR 306
Query: 191 SRTGGEPACRCELQTPARCDHVGSTXXXXXXXXXXXXXXNSGDSRAVLCRAGVPVPLSVD 250
G E +P + VGST N GDSRAVL R +PLSVD
Sbjct: 307 PVVGSSDRMVLEAVSP---ETVGSTAVVALVCSSHIIVSNCGDSRAVLLRGKDSMPLSVD 363
Query: 251 HK 252
HK
Sbjct: 364 HK 365
>AT1G72770.1 | chr1:27390998-27392851 FORWARD LENGTH=512
Length = 511
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 75/179 (41%), Gaps = 17/179 (9%)
Query: 90 PRYGVTSVFGRRREMEDAVSIRPDFLR-----------GSTSSGKH---HFFGVFDGHGC 135
P +G S+ G R EMEDA ++ P FL+ G + S H HFFGV+DGHG
Sbjct: 188 PLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGG 247
Query: 136 SHVARMCQDRMHELVVDAYXXXXXXXXXXXXXXXXXDVMEKGFAR--MDDEATIWAKSRT 193
VA C+DR+H + + +K F + + I K
Sbjct: 248 HKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGR 307
Query: 194 GGEPACRCELQTPARCDHVGSTXXXXXXXXXXXXXXNSGDSRAVLCRAGVPVPLSVDHK 252
+ L+ A + VGST N GDSRAVL R +PLSVDHK
Sbjct: 308 AVVGSSDKVLEAVA-SETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHK 365
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,448,009
Number of extensions: 130779
Number of successful extensions: 279
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 9
Length of query: 322
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,392,385
Effective search space: 1871501855
Effective search space used: 1871501855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)