Os05g0447000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pleckstrin homology domain-containing protein 1 (AtPH1).
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Os05g0447000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pleckstrin homology domain-containing protein 1 (AtPH1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.52 | 0.295 | 9.75 | 0.729 | 0.68 | -0.594 | -0.479 | -2.84 | 0.372 | 20.7 | 1.585 | 5874 | -- | -- |
| 43.2 | 0.306 | 9.69 | 1.31 | 0.788 | -0.485 | -0.138 | -- | 0.543 | 21 | 30.93 | 12307 | -- | -- |
| 40.17 | 0.295 | 9.75 | 0.745 | 0.686 | -0.587 | -- | -2.72 | 0.374 | 21 | 1.59 | 5823 | -- | -- |
| 42.74 | 0.304 | 9.69 | 1.25 | 0.716 | -0.498 | -- | -- | 0.512 | 21.1 | 20.33 | 12628 | -- | -- |
| 64.79 | 0.377 | 9.71 | 1.25 | -- | -0.378 | -- | -0.0521 | 0.39 | -- | 1.59 | 5823 | -- | -- |
| 51.51 | 0.336 | 9.73 | 1.24 | 0.714 | -- | -0.186 | -- | 0.381 | 20.9 | -- | -- | -- | -- |
| 51.62 | 0.336 | 9.73 | 1.25 | 0.714 | -- | -- | -- | 0.381 | 21 | -- | -- | -- | -- |
| 64.81 | 0.377 | 9.71 | 1.25 | -- | -0.378 | -- | -- | 0.39 | -- | 1.59 | 5823 | -- | -- |
| 69.32 | 0.388 | 9.73 | -- | 0.728 | -0.745 | -- | -- | 0.381 | 20.9 | 40 | 24511 | -- | -- |
| 80.89 | 0.42 | 9.71 | 1.25 | -- | -- | -- | -- | 0.377 | -- | -- | -- | -- | -- |
| 92.76 | 0.451 | 9.76 | -- | 0.713 | -- | -- | -- | 0.242 | 21.1 | -- | -- | -- | -- |
| 96.26 | 0.457 | 9.71 | -- | -- | -0.785 | -- | -- | 0.361 | -- | 49.33 | 24751 | -- | -- |
| 122.11 | 0.516 | 9.74 | -- | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.80 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 2 | 37.87 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 3 | 37.93 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 9 | 37.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 7 |
| 22 | 37.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 29 | 37.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 31 | 38.04 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 71 | 38.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 170 | 39.09 | temperature | 30 | 14400 | > th | dose dependent | sin | 8 | NA |
| 187 | 39.10 | temperature | 30 | 14400 | > th | dose independent | sin | 9 | NA |
| 189 | 39.11 | temperature | 30 | 14400 | < th | dose independent | sin | 9 | NA |
| 195 | 39.13 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 203 | 39.16 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 20 |
| 204 | 39.16 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 22 |
| 212 | 39.18 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 241 | 39.23 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 259 | 39.28 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 261 | 39.28 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 281 | 39.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 376 | 39.37 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 402 | 39.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 482 | 39.43 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 483 | 39.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 485 | 39.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 486 | 39.43 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 491 | 39.44 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 493 | 39.44 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 620 | 39.44 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 22 |
| 851 | 39.56 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 872 | 39.56 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 892 | 39.59 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 903 | 39.60 | temperature | 30 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 913 | 39.61 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 983 | 39.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 11 |