BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0447000 Os05g0447000|AK108280
         (172 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05710.1  | chr5:1715943-1716377 FORWARD LENGTH=145            207   2e-54
AT2G29700.1  | chr2:12697571-12698008 FORWARD LENGTH=146          196   6e-51

>AT5G05710.1 | chr5:1715943-1716377 FORWARD LENGTH=145
          Length = 144

 Score =  207 bits (528), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/150 (68%), Positives = 117/150 (78%), Gaps = 9/150 (6%)

Query: 4   SLWRAVMXXXXXXXXXXXXXXXXXXXXXVEFWHGGERTGWLNKQGEYIKTWRRRWFVLKQ 63
           SLWRAV+                     VEFW   ERTGWL KQGEYIKTWRRRWFVLKQ
Sbjct: 3   SLWRAVIGGQNNNSEDYGG---------VEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQ 53

Query: 64  GRLFWFKDAAVTRGSVPRGVIPVATCLTVKGAEDVINRQFAFELSTPTDTMYFIADSEKE 123
           G+LFWFKD+ VTR S PRGV+PV +CLT KGAEDV+N+Q AFELST  +TMYFIADSEKE
Sbjct: 54  GKLFWFKDSDVTRVSRPRGVVPVESCLTAKGAEDVLNKQNAFELSTRNETMYFIADSEKE 113

Query: 124 KEEWINSIGRSIVQHSRSVTDAEVVDYDSR 153
           KE+WINSIGRSIVQ+SRSVTD+E+VDYD++
Sbjct: 114 KEDWINSIGRSIVQNSRSVTDSEIVDYDNK 143



>AT2G29700.1 | chr2:12697571-12698008 FORWARD LENGTH=146
          Length = 145

 Score =  196 bits (498), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 94/124 (75%), Positives = 107/124 (86%), Gaps = 2/124 (1%)

Query: 32  VEFWHGGERTGWLNKQGEYIKTWRRRWFVLKQGRLFWFKD--AAVTRGSVPRGVIPVATC 89
           +EFW   ER+GWL KQG+YIKTWRRRWFVLK+G+L WFKD  AA  RGS PRGVI V  C
Sbjct: 21  IEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKDQAAAGIRGSTPRGVISVGDC 80

Query: 90  LTVKGAEDVINRQFAFELSTPTDTMYFIADSEKEKEEWINSIGRSIVQHSRSVTDAEVVD 149
           LTVKGAEDV+N+ FAFELS+ + TM+FIAD+EKEKEEWINSIGRSIVQHSRSVTD+EV+D
Sbjct: 81  LTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLD 140

Query: 150 YDSR 153
           YD R
Sbjct: 141 YDHR 144



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,718,065
Number of extensions: 145158
Number of successful extensions: 612
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 2
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)