Os05g0443700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : t-snare domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0443700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : t-snare domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.1 | 0.231 | 9.08 | -0.445 | 0.58 | 0.491 | -0.00724 | -0.155 | -0.133 | 7.73 | 8.76 | 268 | -- | -- |
| 24.17 | 0.229 | 9.08 | -0.439 | 0.585 | 0.487 | 0.038 | -- | -0.136 | 7.74 | 8.45 | 261 | -- | -- |
| 24.08 | 0.229 | 9.08 | -0.442 | 0.589 | 0.485 | -- | -0.144 | -0.136 | 7.7 | 8.626 | 260 | -- | -- |
| 24.18 | 0.229 | 9.08 | -0.44 | 0.586 | 0.488 | -- | -- | -0.136 | 7.73 | 8.444 | 260 | -- | -- |
| 27.27 | 0.243 | 9.08 | -0.443 | -- | 0.837 | -- | -0.244 | -0.0939 | -- | 4 | 628 | -- | -- |
| 27.72 | 0.247 | 9.09 | -0.422 | 0.802 | -- | -0.0772 | -- | -0.147 | 5.18 | -- | -- | -- | -- |
| 27.74 | 0.247 | 9.09 | -0.422 | 0.802 | -- | -- | -- | -0.146 | 5.19 | -- | -- | -- | -- |
| 27.03 | 0.242 | 9.09 | -0.407 | -- | 0.916 | -- | -- | -0.0889 | -- | 4.01 | 639 | -- | -- |
| 27.59 | 0.245 | 9.06 | -- | 0.603 | 0.469 | -- | -- | -0.0677 | 7.3 | 10.6 | 235 | -- | -- |
| 61.37 | 0.366 | 9.1 | -0.393 | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
| 32.42 | 0.266 | 9.08 | -- | 0.795 | -- | -- | -- | -0.0992 | 5.2 | -- | -- | -- | -- |
| 31.28 | 0.261 | 9.08 | -- | -- | 0.911 | -- | -- | -0.0452 | -- | 3.659 | 639 | -- | -- |
| 65.46 | 0.378 | 9.09 | -- | -- | -- | -- | -- | -0.0823 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.13 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 3 | 23.27 | radiation | 10.0 | 90 | < th | dose independent | rect. | 6 | 17 |
| 7 | 23.38 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 10 | 23.41 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 11 | 23.43 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 15 | 23.47 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 20 |
| 18 | 23.51 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 33 | 23.60 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 52 | 23.72 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 65 | 23.77 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 12 |
| 78 | 23.80 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 94 | 23.84 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 11 |
| 101 | 23.86 | radiation | 10.0 | 270 | < th | dose independent | sin | 0 | NA |
| 103 | 23.86 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 22 |
| 104 | 23.86 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 9 |
| 107 | 23.88 | radiation | 30.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 109 | 23.89 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 110 | 23.89 | radiation | 20.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 137 | 23.95 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 140 | 23.95 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 147 | 23.96 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 8 | 15 |
| 148 | 23.96 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 163 | 23.99 | radiation | 10.0 | 270 | < th | dose independent | rect. | 12 | 22 |
| 181 | 24.00 | radiation | 10.0 | 270 | > th | dose independent | sin | 1 | NA |
| 210 | 24.02 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 243 | 24.05 | radiation | 1.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 322 | 24.10 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 364 | 24.11 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 369 | 24.12 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 9 |
| 377 | 24.13 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 23 |
| 406 | 24.15 | radiation | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 415 | 24.16 | radiation | 1.0 | 270 | > th | dose dependent | no | NA | NA |
| 559 | 24.23 | radiation | 10.0 | 270 | < th | dose independent | no | NA | NA |
| 567 | 24.24 | radiation | 10.0 | 270 | > th | dose independent | no | NA | NA |
| 666 | 24.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 676 | 24.28 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 692 | 24.30 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 704 | 24.31 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 747 | 24.34 | radiation | 20.0 | 90 | < th | dose dependent | sin | 21 | NA |
| 794 | 24.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 14 |
| 798 | 24.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 803 | 24.41 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 805 | 24.41 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 821 | 24.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 10 |
| 826 | 24.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 846 | 24.45 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 10 |
| 851 | 24.46 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 852 | 24.46 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 854 | 24.46 | radiation | 30.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 864 | 24.46 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 10 | 11 |
| 867 | 24.47 | humidity | 90.0 | 270 | < th | dose independent | rect. | 3 | 4 |