BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0443700 Os05g0443700|AK071068
(335 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G27700.1 | chr1:9640394-9641752 REVERSE LENGTH=298 99 4e-21
AT4G30240.1 | chr4:14808359-14809745 REVERSE LENGTH=301 86 3e-17
AT2G18860.1 | chr2:8164358-8165650 FORWARD LENGTH=297 81 8e-16
>AT1G27700.1 | chr1:9640394-9641752 REVERSE LENGTH=298
Length = 297
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 119/250 (47%), Gaps = 43/250 (17%)
Query: 1 MAEGFGRWEADPLFPAAECVQDSADRMEGVYRLLLHERKLIQDDTSHTKRRVSMQYERDV 60
M RWE DP FPAAE VQ+SADRME YR L+ ++ +K S Q RD+
Sbjct: 1 MTTSLDRWEKDPFFPAAEEVQESADRMESAYRTWLNGKR------DSSKVWDSEQLHRDL 54
Query: 61 CTALGTTKWQLEQFEREVNAAA---LSNKSNSRENAILQFRQFIRAIAEQISQVEDSL-E 116
ALGTTKWQL++F++ V ++ LS+++ R R+F + Q+S++E SL E
Sbjct: 55 HAALGTTKWQLDEFQKAVKSSYDNRLSDETRDRH------REFTFVMEAQVSKIEKSLKE 108
Query: 117 SLRNDSIRTPKHSYLTEHDGDELASFLSGSNRKD-------------------NHVIYST 157
+ ++D TP+ L E D +ELA FL+G + N +
Sbjct: 109 AAQSDGKGTPRWVRLDEDDRNELALFLTGPSESAKANPNGHRRTASAAEFSAWNIAVSDD 168
Query: 158 G-----TDEIVELKLDSVPAVNGYHSTQERTS--CEFRYSGEDVEGAAKPQCSCGENACE 210
G DE V VP+ +G+ + + S C ++ G D +G + A +
Sbjct: 169 GLVKKSCDEPVVRPPRKVPSFSGFLNYMDPVSKHCNRKWKGLDRQGDSDAAL-LPIQANQ 227
Query: 211 GDHNGSSMRG 220
D NG S RG
Sbjct: 228 QDMNGCSERG 237
>AT4G30240.1 | chr4:14808359-14809745 REVERSE LENGTH=301
Length = 300
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 16/152 (10%)
Query: 1 MAEGFGRWEADPLFPAAECVQDSADRMEGVYRLLLHERKLIQDDTSHTKRRVSMQYE--- 57
+A F W+ D F AAE VQ+SAD ME YRL E++ RVS++ +
Sbjct: 3 VANSFDLWQKDVFFSAAEEVQESADIMESAYRLWFKEKR---------DGRVSVESDELC 53
Query: 58 RDVCTALGTTKWQLEQFEREVNAAALSNKSNSRENAILQFRQFIRAIAEQISQVEDS-LE 116
+++ AL T KWQLE+FER A +LS+ + + + + +QF+ AI QI QVE + LE
Sbjct: 54 KELQAALSTAKWQLEEFER---AVSLSHGNCRDDTTLTRHKQFVTAIENQIYQVESTLLE 110
Query: 117 SLRNDSIRTPKHSYLTEHDGDELASFLSGSNR 148
SL + + + L + + D+LA FLSGS++
Sbjct: 111 SLSENGKQPLRWVDLNKEERDDLAMFLSGSSQ 142
>AT2G18860.1 | chr2:8164358-8165650 FORWARD LENGTH=297
Length = 296
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 19/150 (12%)
Query: 1 MAEGFGRWEADPLFPAAECVQDSADRMEGVYRLLLHERKLIQDDTSHTKRRVSMQYERDV 60
+ F W+ D F AAE VQ S D ME YRL + E+K D+ +++
Sbjct: 3 VVNSFDLWQKDVFFSAAEEVQKSTDIMESAYRLWIREKK---DEIC-----------KEL 48
Query: 61 CTALGTTKWQLEQFEREVNAAALSNK-SNSRENAILQFRQFIRAIAEQISQVEDSLESLR 119
ALGT KWQLE+FE+ A LS+K +++ + +QF+ AI QI +VE SL+
Sbjct: 49 QAALGTAKWQLEEFEK---AVRLSHKRCGDNDSSSTRHKQFVTAIENQIHRVETSLQEAY 105
Query: 120 NDSIRTP-KHSYLTEHDGDELASFLSGSNR 148
+++ + P + L E + D+LA FLSGS+R
Sbjct: 106 SENGKKPLRWVDLNEEERDDLAMFLSGSSR 135
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,145,985
Number of extensions: 300522
Number of successful extensions: 843
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 837
Number of HSP's successfully gapped: 3
Length of query: 335
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,392,385
Effective search space: 1980602860
Effective search space used: 1980602860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)