Os05g0420600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome c.
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Os05g0420600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome c.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.44 | 0.28 | 13.4 | -0.335 | 0.447 | -0.515 | 0.244 | -1.71 | -0.123 | 8.55 | 0.1258 | 4540 | -- | -- |
| 38.17 | 0.288 | 13.3 | -0.378 | 0.449 | -0.468 | 0.263 | -- | -0.0989 | 8.51 | 0.5 | 3834 | -- | -- |
| 35.63 | 0.278 | 13.4 | -0.329 | 0.447 | -0.517 | -- | -1.69 | -0.124 | 8.54 | 0.1316 | 4539 | -- | -- |
| 36.68 | 0.282 | 13.4 | -0.33 | 0.411 | -0.483 | -- | -- | -0.109 | 8.7 | 0.6117 | 20318 | -- | -- |
| 46.83 | 0.319 | 13.4 | -0.342 | -- | -0.505 | -- | -1.7 | -0.115 | -- | 0.09943 | 4590 | -- | -- |
| 42.1 | 0.304 | 13.3 | -0.516 | 0.444 | -- | 0.238 | -- | -0.0778 | 8.63 | -- | -- | -- | -- |
| 42.29 | 0.305 | 13.3 | -0.509 | 0.444 | -- | -- | -- | -0.0778 | 8.6 | -- | -- | -- | -- |
| 46.97 | 0.319 | 13.4 | -0.17 | -- | -0.549 | -- | -- | -0.136 | -- | 0.5405 | 22291 | -- | -- |
| 37 | 0.283 | 13.4 | -- | 0.434 | -0.557 | -- | -- | -0.132 | 8.69 | 1.242 | 32564 | -- | -- |
| 53.38 | 0.341 | 13.4 | -0.507 | -- | -- | -- | -- | -0.0739 | -- | -- | -- | -- | -- |
| 49.11 | 0.328 | 13.3 | -- | 0.442 | -- | -- | -- | -0.0212 | 8.69 | -- | -- | -- | -- |
| 47.53 | 0.321 | 13.4 | -- | -- | -0.604 | -- | -- | -0.126 | -- | 0.5261 | 22256 | -- | -- |
| 60.18 | 0.362 | 13.3 | -- | -- | -- | -- | -- | -0.0176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.89 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 2 | 32.94 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 32.96 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 6 | 32.99 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 13 | 33.02 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 21 | 33.10 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 34 | 33.20 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 43 | 33.25 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 81 | 33.63 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 85 | 33.65 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 89 | 33.66 | wind | 3.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 98 | 33.71 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 149 | 33.86 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 176 | 33.92 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 177 | 33.92 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 179 | 33.92 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 211 | 33.97 | wind | 3.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 291 | 34.12 | wind | 3.0 | 43200 | > th | dose independent | sin | 6 | NA |
| 305 | 34.15 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 309 | 34.16 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 324 | 34.19 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 328 | 34.19 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 9 |
| 339 | 34.21 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 341 | 34.21 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 356 | 34.23 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 360 | 34.24 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 370 | 34.25 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 469 | 34.42 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 496 | 34.46 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 497 | 34.46 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 534 | 34.50 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 544 | 34.51 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 13 |
| 548 | 34.51 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 553 | 34.51 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 13 |
| 556 | 34.51 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 17 |
| 557 | 34.51 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 19 |
| 561 | 34.52 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 15 |
| 567 | 34.52 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 15 |
| 573 | 34.53 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 581 | 34.53 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 15 |
| 668 | 34.64 | wind | 1.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 700 | 34.66 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 14 |
| 748 | 34.71 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 759 | 34.72 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 836 | 34.80 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 850 | 34.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 886 | 34.84 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 887 | 34.84 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 890 | 34.84 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 911 | 34.86 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 914 | 34.86 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 938 | 34.88 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 950 | 34.89 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |