BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0420600 Os05g0420600|AK060267
         (112 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10040.1  | chr4:6277083-6278281 FORWARD LENGTH=113            216   2e-57
AT1G22840.1  | chr1:8079384-8080286 FORWARD LENGTH=115            207   1e-54

>AT4G10040.1 | chr4:6277083-6278281 FORWARD LENGTH=113
          Length = 112

 Score =  216 bits (549), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 101/112 (90%), Positives = 107/112 (95%)

Query: 1   MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60
           MASF EAPPGNPKAGEKIF+TKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYS A
Sbjct: 1   MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112
           NK+MAV WEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLKE T+
Sbjct: 61  NKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112



>AT1G22840.1 | chr1:8079384-8080286 FORWARD LENGTH=115
          Length = 114

 Score =  207 bits (526), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 97/112 (86%), Positives = 103/112 (91%)

Query: 1   MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60
           MASF EAPPGN KAGEKIF+TKCAQCHTV+ GAGHKQGPNLNGLFGRQSGTT GYSYS A
Sbjct: 1   MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61  NKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112
           NKN AV WEE  LYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLKE+T+
Sbjct: 61  NKNKAVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,821,023
Number of extensions: 115105
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 11,106,569
Length adjustment: 81
Effective length of query: 31
Effective length of database: 8,885,873
Effective search space: 275462063
Effective search space used: 275462063
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)