BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0420600 Os05g0420600|AK060267
         (112 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0420600  Cytochrome c                                        234   1e-62
Os01g0885000  Similar to Cytochrome c                             174   1e-44
AK121277                                                          148   1e-36
AK062980                                                          142   6e-35

>Os05g0420600 Cytochrome c
          Length = 112

 Score =  234 bits (597), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60
           MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA
Sbjct: 1   MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60

Query: 61  NKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112
           NKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS
Sbjct: 61  NKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112



>Os01g0885000 Similar to Cytochrome c
          Length = 111

 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 94/112 (83%), Gaps = 1/112 (0%)

Query: 1   MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60
           MA+FS+APPG+  AGEKIF+TKCA CH VDK AGHK GPNLNGLFGRQSGT PG+SY + 
Sbjct: 1   MATFSDAPPGDAAAGEKIFRTKCAYCHAVDKAAGHKHGPNLNGLFGRQSGTAPGFSYPSG 60

Query: 61  NKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112
           +K + VIWEENTLYDYLL PKKY P  KM F GLK+PQ+RADLI+YLK AT+
Sbjct: 61  DKIVPVIWEENTLYDYLLTPKKYTP-AKMGFNGLKQPQDRADLIAYLKNATA 111



>AK121277 
          Length = 95

 Score =  148 bits (373), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 74/82 (90%)

Query: 1  MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60
          MASF  AP GN  +G+KIF+TKCAQCHTV++G  HKQGPNL+GLFGRQSGTTPGY+YSTA
Sbjct: 1  MASFGVAPVGNAASGKKIFRTKCAQCHTVERGGAHKQGPNLHGLFGRQSGTTPGYAYSTA 60

Query: 61 NKNMAVIWEENTLYDYLLNPKK 82
          NKNMAV+WEE TLYDYLLNPKK
Sbjct: 61 NKNMAVVWEEGTLYDYLLNPKK 82



>AK062980 
          Length = 109

 Score =  142 bits (358), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 78/102 (76%)

Query: 10  GNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWE 69
           GN K GEKIFK +C QCHT++ G  HK GPNL+G++ RQSG   GY YS AN    V W 
Sbjct: 6   GNAKNGEKIFKARCTQCHTINAGGSHKVGPNLHGMWNRQSGKAKGYDYSAANLERGVTWN 65

Query: 70  ENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEAT 111
           + TL++YL NPKKYIPGTKM+F GLKK +ER+DLI+Y+K+A+
Sbjct: 66  DETLFEYLENPKKYIPGTKMIFAGLKKDKERSDLIAYMKQAS 107



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,354,140
Number of extensions: 172031
Number of successful extensions: 256
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 4
Length of query: 112
Length of database: 17,035,801
Length adjustment: 79
Effective length of query: 33
Effective length of database: 12,910,895
Effective search space: 426059535
Effective search space used: 426059535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)