Os05g0408300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0408300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.56 | 0.406 | 8.79 | -0.195 | 1.09 | 0.857 | 0.484 | 1.09 | -0.0568 | 9.03 | 24 | 15 | -- | -- |
| 75.16 | 0.407 | 8.81 | -0.335 | 1.08 | 0.937 | 0.573 | -- | -0.097 | 9.04 | 24 | 15 | -- | -- |
| 75.15 | 0.407 | 8.79 | -0.139 | 1.08 | 0.856 | -- | 1.36 | -0.0547 | 8.97 | 23.53 | 12 | -- | -- |
| 76.2 | 0.407 | 8.81 | -0.328 | 1.09 | 0.986 | -- | -- | -0.104 | 8.85 | 24.07 | 12 | -- | -- |
| 139.69 | 0.553 | 8.84 | -0.225 | -- | 1.09 | -- | 1.04 | -0.114 | -- | 21.29 | 5 | -- | -- |
| 88.48 | 0.441 | 8.79 | -0.195 | 1.15 | -- | 0.847 | -- | 0.0163 | 10.3 | -- | -- | -- | -- |
| 91.28 | 0.447 | 8.78 | -0.163 | 1.15 | -- | -- | -- | 0.0173 | 10.2 | -- | -- | -- | -- |
| 140.5 | 0.552 | 8.86 | -0.386 | -- | 1.16 | -- | -- | -0.17 | -- | 20.88 | 4 | -- | -- |
| 78.82 | 0.416 | 8.8 | -- | 1.08 | 0.897 | -- | -- | -0.0554 | 9 | 24.1 | 12 | -- | -- |
| 172.11 | 0.613 | 8.82 | -0.179 | -- | -- | -- | -- | 0.015 | -- | -- | -- | -- | -- |
| 91.98 | 0.449 | 8.78 | -- | 1.16 | -- | -- | -- | 0.0354 | 10.2 | -- | -- | -- | -- |
| 144.51 | 0.56 | 8.84 | -- | -- | 1.07 | -- | -- | -0.11 | -- | 21.11 | 4 | -- | -- |
| 172.96 | 0.614 | 8.81 | -- | -- | -- | -- | -- | 0.0349 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.01 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 12 | 68.11 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 30 | 70.01 | temperature | 25.0 | 10 | > th | dose dependent | sin | 8 | NA |
| 45 | 70.52 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 61 | 70.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 18 |
| 68 | 71.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 75 | 71.28 | temperature | 30.0 | 270 | < th | dose independent | rect. | 10 | 9 |
| 84 | 71.62 | temperature | 25.0 | 30 | < th | dose independent | sin | 6 | NA |
| 93 | 71.79 | temperature | 25.0 | 30 | > th | dose independent | rect. | 24 | 11 |
| 97 | 71.88 | temperature | 10.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 133 | 72.38 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 154 | 72.63 | humidity | 60.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 156 | 72.67 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 6 |
| 165 | 72.76 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 182 | 72.96 | temperature | 30.0 | 720 | < th | dose independent | rect. | 1 | 12 |
| 186 | 72.99 | temperature | 25.0 | 30 | > th | dose independent | sin | 6 | NA |
| 192 | 73.06 | humidity | 70.0 | 10 | > th | dose independent | rect. | 14 | 16 |
| 197 | 73.13 | temperature | 30.0 | 720 | < th | dose independent | rect. | 2 | 10 |
| 252 | 73.62 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 12 |
| 256 | 73.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 20 |
| 276 | 73.80 | humidity | 70.0 | 90 | > th | dose independent | rect. | 15 | 15 |
| 281 | 73.87 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 8 |
| 297 | 73.92 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 324 | 74.04 | radiation | 20.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 334 | 74.11 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 16 |
| 346 | 74.18 | temperature | 30.0 | 10 | < th | dose dependent | sin | 5 | NA |
| 347 | 74.19 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 6 | 5 |
| 370 | 74.30 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 2 |
| 400 | 74.41 | temperature | 30.0 | 10 | < th | dose independent | rect. | 12 | 18 |
| 406 | 74.43 | temperature | 25.0 | 30 | > th | dose independent | rect. | 21 | 14 |
| 424 | 74.50 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 7 |
| 431 | 74.53 | temperature | 30.0 | 720 | < th | dose independent | rect. | 22 | 15 |
| 433 | 74.54 | radiation | 1.0 | 720 | < th | dose independent | sin | 10 | NA |
| 481 | 74.72 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 8 |
| 496 | 74.73 | temperature | 30.0 | 720 | < th | dose independent | sin | 4 | NA |
| 499 | 74.74 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 14 |
| 503 | 74.76 | temperature | 25.0 | 10 | > th | dose independent | rect. | 6 | 5 |
| 508 | 74.78 | temperature | 25.0 | 90 | > th | dose independent | rect. | 6 | 5 |
| 524 | 74.83 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 527 | 74.83 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 534 | 74.85 | radiation | 1.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 546 | 74.91 | radiation | 1.0 | 720 | > th | dose independent | sin | 11 | NA |
| 551 | 74.93 | temperature | 30.0 | 720 | < th | dose independent | sin | 8 | NA |
| 553 | 74.93 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 2 |
| 556 | 74.94 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 16 |
| 574 | 74.95 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 582 | 74.96 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 601 | 74.98 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 609 | 75.01 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 612 | 75.03 | temperature | 25.0 | 30 | < th | dose independent | rect. | 3 | 9 |
| 613 | 75.03 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 13 |
| 614 | 75.03 | temperature | 25.0 | 30 | > th | dose independent | rect. | 19 | 16 |
| 639 | 75.10 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 645 | 75.13 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 656 | 75.17 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 666 | 75.20 | temperature | 30.0 | 720 | < th | dose independent | sin | 6 | NA |
| 669 | 75.21 | humidity | 60.0 | 720 | > th | dose independent | rect. | 11 | 2 |
| 678 | 75.24 | temperature | 30.0 | 720 | > th | dose independent | sin | 4 | NA |
| 717 | 75.36 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 13 |
| 720 | 75.36 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 745 | 75.41 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 2 | NA |
| 750 | 75.42 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 766 | 75.43 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 770 | 75.45 | temperature | 25.0 | 90 | < th | dose independent | rect. | 23 | 12 |
| 772 | 75.45 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 775 | 75.45 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 779 | 75.47 | temperature | 25.0 | 30 | < th | dose independent | rect. | 3 | 7 |
| 788 | 75.50 | temperature | 30.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 789 | 75.50 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 2 |
| 807 | 75.55 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 15 |
| 809 | 75.55 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 19 |
| 811 | 75.56 | temperature | 30.0 | 720 | < th | dose independent | rect. | 19 | 16 |
| 834 | 75.61 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 15 |
| 836 | 75.61 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 13 | 17 |
| 848 | 75.63 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 852 | 75.64 | temperature | 30.0 | 720 | < th | dose independent | rect. | 10 | 13 |
| 859 | 75.65 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 864 | 75.65 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 15 |
| 873 | 75.68 | radiation | 10.0 | 30 | < th | dose independent | sin | 7 | NA |
| 916 | 75.73 | radiation | 30.0 | 720 | > th | dose independent | rect. | 14 | 19 |
| 925 | 75.74 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 19 |
| 931 | 75.74 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 945 | 75.76 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 19 |
| 948 | 75.76 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 19 |