BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0408300 Os05g0408300|AK068553
         (471 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10740.1  | chr1:3568343-3570466 REVERSE LENGTH=474            626   e-180
AT1G23330.1  | chr1:8279874-8281891 REVERSE LENGTH=472            610   e-175

>AT1G10740.1 | chr1:3568343-3570466 REVERSE LENGTH=474
          Length = 473

 Score =  626 bits (1614), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 301/462 (65%), Positives = 348/462 (75%), Gaps = 17/462 (3%)

Query: 6   LSLLELGVSATVHLLFGLYVFXXXXXXXXXXXXXXXGCLLLRRPAAPGLVNVXXXXXXXX 65
           L L EL VS+ VHLL+G Y+F                  L +   A G            
Sbjct: 10  LQLAELFVSSIVHLLYGFYIFSSAVAGDISQTLND---YLFKSNVAFGETGQNQTNVEGL 66

Query: 66  XXXXXPVVLDGSPPPIVLVHXXXXXXXXXXXXXSYFAGAEKKDDRVLVPDLGSLTSIHDR 125
                        PPIVLVH             SYF GAEKKD+RVLVPDLGSLTSI+DR
Sbjct: 67  -------------PPIVLVHGIFGFGKGRLGGLSYFGGAEKKDERVLVPDLGSLTSIYDR 113

Query: 126 ARELFYYLKGGQVDYGEEHSKVFGHTRFGRTYDTGHYPVWDEQNPVHFVGHSAGVQVVRV 185
           ARELFYYLKGG VD+GEEHS+  GH+RFGR Y+ G YP WDE +P+HFVGHSAG QVVRV
Sbjct: 114 ARELFYYLKGGVVDFGEEHSEACGHSRFGRRYEQGQYPEWDEDHPIHFVGHSAGAQVVRV 173

Query: 186 LHQMLADKAFPG-HDTSEDWVLSLTSLSGALNGTTRTYYDGMLAEDGRSMKSICLLQLCR 244
           L QMLAD+AF G  +T+E+WVLS+TSLSGA NGTTRTY DGM  +DG SMK ICLLQLCR
Sbjct: 174 LQQMLADQAFEGFEETNENWVLSVTSLSGAFNGTTRTYLDGMRTDDGVSMKPICLLQLCR 233

Query: 245 IGVIVYDWLDIPWLKNYYNFGFDHFEMSWRKVGLSGLIDLLLGHTGPFASGDWILPDLTI 304
           IGVI+YDWLDI WLK YYNFGFDHF +SW+K G+ GL+D L+G+ GPFASGDWILPDLTI
Sbjct: 234 IGVIMYDWLDISWLKTYYNFGFDHFNISWKKTGVRGLVDCLMGNAGPFASGDWILPDLTI 293

Query: 305 QGSLTLNSTLRTFPNTFYFSYATKRTRKLFGITVPSSVLGIHPMLFLRVLQMCMWRHPQN 364
           QGS ++NS L+TFPNT+YFSYATKRTR++ G+T+PS VLGIHPMLFLRV QM  W+ PQ+
Sbjct: 294 QGSTSINSNLQTFPNTYYFSYATKRTRRVMGMTIPSGVLGIHPMLFLRVFQMSQWKFPQD 353

Query: 365 APLPYKGYRDEDWEDNDGALNTISMTHPRIPTEHPNRLVVDDSDCHPLQPGIWYYKIIEA 424
              PYKGYRDEDW++NDGALNTISMTHPR+P EHP+R +  DS+C  LQPGIWYYKI+EA
Sbjct: 354 VSPPYKGYRDEDWQENDGALNTISMTHPRLPVEHPSRFIRSDSECQTLQPGIWYYKIVEA 413

Query: 425 DHILFIVNRERAGVQFDLLYDGIFQRCRKHAFRRSPPTVPNE 466
           DHI+FIVNRERAGVQFDL+YD IFQRCRKH FR+ P T+PN+
Sbjct: 414 DHIMFIVNRERAGVQFDLIYDSIFQRCRKHVFRKIPQTLPNQ 455



>AT1G23330.1 | chr1:8279874-8281891 REVERSE LENGTH=472
          Length = 471

 Score =  610 bits (1573), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 285/396 (71%), Positives = 337/396 (85%), Gaps = 3/396 (0%)

Query: 79  PPIVLVHXXXXXXXXXXXXXSYFAGAEKKDDRVLVPDLGSLTSIHDRARELFYYLKGGQV 138
           PPIVLVH             SYFAGAEKKD+RVLVPDLGSLTS+HDRARELFYYLKGG V
Sbjct: 70  PPIVLVHGIFGFGKGRLGGLSYFAGAEKKDERVLVPDLGSLTSVHDRARELFYYLKGGLV 129

Query: 139 DYGEEHSKVFGHTRFGRTYDTGHYPVWDEQNPVHFVGHSAGVQVVRVLHQMLADKAFPGH 198
           DYGEEHSK  GH++FGR Y+ G Y  WDE +P+HFVGHSAG QVVRVL QMLADK F G+
Sbjct: 130 DYGEEHSKACGHSQFGRFYEKGEYQEWDEDHPIHFVGHSAGAQVVRVLQQMLADKMFEGY 189

Query: 199 D-TSEDWVLSLTSLSGALNGTTRTYYDGMLAEDGRSMKSICLLQLCRIGVIVYDWLDIPW 257
           + T+E+WVLSLTSLSGALNGTTRTY DG+  EDG+S+K I LLQ+C++GVI+YDW+DIPW
Sbjct: 190 ENTNENWVLSLTSLSGALNGTTRTYIDGIQPEDGKSLKPISLLQICKLGVIMYDWIDIPW 249

Query: 258 LKNYYNFGFDHFEMSWRKVGLSGLIDLLLGHTGPFAS-GDWILPDLTIQGSLTLNSTLRT 316
           LK+YYNFGFDHF MS +K G+ GL+DLLLG+ GPFA+ GDWILPDL+IQGS+TLN++L+T
Sbjct: 250 LKSYYNFGFDHFNMSRKKTGVRGLVDLLLGNAGPFAACGDWILPDLSIQGSMTLNASLQT 309

Query: 317 FPNTFYFSYATKRTRKLFGI-TVPSSVLGIHPMLFLRVLQMCMWRHPQNAPLPYKGYRDE 375
           FPNTFYFSYATKRT K  G+ TVPS V+GIHP+LF+RVLQM  W+ P++ PLPYKGYRDE
Sbjct: 310 FPNTFYFSYATKRTTKPLGMMTVPSGVMGIHPLLFIRVLQMSQWQFPRDIPLPYKGYRDE 369

Query: 376 DWEDNDGALNTISMTHPRIPTEHPNRLVVDDSDCHPLQPGIWYYKIIEADHILFIVNRER 435
           DW+DNDGALNTISMTHPRIP EH + ++  DSDC PLQPGIWYYKI+EADHI+FI+NRER
Sbjct: 370 DWQDNDGALNTISMTHPRIPVEHSSLILRSDSDCLPLQPGIWYYKIVEADHIMFIINRER 429

Query: 436 AGVQFDLLYDGIFQRCRKHAFRRSPPTVPNESSQSQ 471
           AGV+FDL+YD IF+RCRKH FR++P T+PNE+   +
Sbjct: 430 AGVEFDLIYDSIFERCRKHVFRKAPQTLPNEAQHQE 465



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.142    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,311,054
Number of extensions: 439019
Number of successful extensions: 744
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 2
Length of query: 471
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 369
Effective length of database: 8,310,137
Effective search space: 3066440553
Effective search space used: 3066440553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)