BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0408300 Os05g0408300|AK068553
         (471 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0408300  Conserved hypothetical protein                      875   0.0  
AK071584                                                          856   0.0  

>Os05g0408300 Conserved hypothetical protein
          Length = 471

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/471 (91%), Positives = 430/471 (91%)

Query: 1   MARFILSLLELGVSATVHLLFGLYVFXXXXXXXXXXXXXXXGCLLLRRPAAPGLVNVXXX 60
           MARFILSLLELGVSATVHLLFGLYVF               GCLLLRRPAAPGLVNV   
Sbjct: 1   MARFILSLLELGVSATVHLLFGLYVFSTAVAADISQAAAASGCLLLRRPAAPGLVNVAAA 60

Query: 61  XXXXXXXXXXPVVLDGSPPPIVLVHXXXXXXXXXXXXXSYFAGAEKKDDRVLVPDLGSLT 120
                     PVVLDGSPPPIVLVH             SYFAGAEKKDDRVLVPDLGSLT
Sbjct: 61  GEEEERRGAAPVVLDGSPPPIVLVHGIFGFGKGRLGGLSYFAGAEKKDDRVLVPDLGSLT 120

Query: 121 SIHDRARELFYYLKGGQVDYGEEHSKVFGHTRFGRTYDTGHYPVWDEQNPVHFVGHSAGV 180
           SIHDRARELFYYLKGGQVDYGEEHSKVFGHTRFGRTYDTGHYPVWDEQNPVHFVGHSAGV
Sbjct: 121 SIHDRARELFYYLKGGQVDYGEEHSKVFGHTRFGRTYDTGHYPVWDEQNPVHFVGHSAGV 180

Query: 181 QVVRVLHQMLADKAFPGHDTSEDWVLSLTSLSGALNGTTRTYYDGMLAEDGRSMKSICLL 240
           QVVRVLHQMLADKAFPGHDTSEDWVLSLTSLSGALNGTTRTYYDGMLAEDGRSMKSICLL
Sbjct: 181 QVVRVLHQMLADKAFPGHDTSEDWVLSLTSLSGALNGTTRTYYDGMLAEDGRSMKSICLL 240

Query: 241 QLCRIGVIVYDWLDIPWLKNYYNFGFDHFEMSWRKVGLSGLIDLLLGHTGPFASGDWILP 300
           QLCRIGVIVYDWLDIPWLKNYYNFGFDHFEMSWRKVGLSGLIDLLLGHTGPFASGDWILP
Sbjct: 241 QLCRIGVIVYDWLDIPWLKNYYNFGFDHFEMSWRKVGLSGLIDLLLGHTGPFASGDWILP 300

Query: 301 DLTIQGSLTLNSTLRTFPNTFYFSYATKRTRKLFGITVPSSVLGIHPMLFLRVLQMCMWR 360
           DLTIQGSLTLNSTLRTFPNTFYFSYATKRTRKLFGITVPSSVLGIHPMLFLRVLQMCMWR
Sbjct: 301 DLTIQGSLTLNSTLRTFPNTFYFSYATKRTRKLFGITVPSSVLGIHPMLFLRVLQMCMWR 360

Query: 361 HPQNAPLPYKGYRDEDWEDNDGALNTISMTHPRIPTEHPNRLVVDDSDCHPLQPGIWYYK 420
           HPQNAPLPYKGYRDEDWEDNDGALNTISMTHPRIPTEHPNRLVVDDSDCHPLQPGIWYYK
Sbjct: 361 HPQNAPLPYKGYRDEDWEDNDGALNTISMTHPRIPTEHPNRLVVDDSDCHPLQPGIWYYK 420

Query: 421 IIEADHILFIVNRERAGVQFDLLYDGIFQRCRKHAFRRSPPTVPNESSQSQ 471
           IIEADHILFIVNRERAGVQFDLLYDGIFQRCRKHAFRRSPPTVPNESSQSQ
Sbjct: 421 IIEADHILFIVNRERAGVQFDLLYDGIFQRCRKHAFRRSPPTVPNESSQSQ 471



>AK071584 
          Length = 542

 Score =  856 bits (2211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/460 (90%), Positives = 418/460 (90%)

Query: 12  GVSATVHLLFGLYVFXXXXXXXXXXXXXXXGCLLLRRPAAPGLVNVXXXXXXXXXXXXXP 71
           GVSATVHLLFGLYVF               GCLLLRRPAAPGLVNV             P
Sbjct: 83  GVSATVHLLFGLYVFSTAVAADISQAAAASGCLLLRRPAAPGLVNVAAAGEEEERRGAAP 142

Query: 72  VVLDGSPPPIVLVHXXXXXXXXXXXXXSYFAGAEKKDDRVLVPDLGSLTSIHDRARELFY 131
           VVLDGSPPPIVLVH             SYFAGAEKKDDRVLVPDLGSLTSIHDRARELFY
Sbjct: 143 VVLDGSPPPIVLVHGIFGFGKGRLGGLSYFAGAEKKDDRVLVPDLGSLTSIHDRARELFY 202

Query: 132 YLKGGQVDYGEEHSKVFGHTRFGRTYDTGHYPVWDEQNPVHFVGHSAGVQVVRVLHQMLA 191
           YLKGGQVDYGEEHSKVFGHTRFGRTYDTGHYPVWDEQNPVHFVGHSAGVQVVRVLHQMLA
Sbjct: 203 YLKGGQVDYGEEHSKVFGHTRFGRTYDTGHYPVWDEQNPVHFVGHSAGVQVVRVLHQMLA 262

Query: 192 DKAFPGHDTSEDWVLSLTSLSGALNGTTRTYYDGMLAEDGRSMKSICLLQLCRIGVIVYD 251
           DKAFPGHDTSEDWVLSLTSLSGALNGTTRTYYDGMLAEDGRSMKSICLLQLCRIGVIVYD
Sbjct: 263 DKAFPGHDTSEDWVLSLTSLSGALNGTTRTYYDGMLAEDGRSMKSICLLQLCRIGVIVYD 322

Query: 252 WLDIPWLKNYYNFGFDHFEMSWRKVGLSGLIDLLLGHTGPFASGDWILPDLTIQGSLTLN 311
           WLDIPWLKNYYNFGFDHFEMSWRKVGLSGLIDLLLGHTGPFASGDWILPDLTIQGSLTLN
Sbjct: 323 WLDIPWLKNYYNFGFDHFEMSWRKVGLSGLIDLLLGHTGPFASGDWILPDLTIQGSLTLN 382

Query: 312 STLRTFPNTFYFSYATKRTRKLFGITVPSSVLGIHPMLFLRVLQMCMWRHPQNAPLPYKG 371
           STLRTFPNTFYFSYATKRTRKLFGITVPSSVLGIHPMLFLRV QMCMWRHPQNAPLPYKG
Sbjct: 383 STLRTFPNTFYFSYATKRTRKLFGITVPSSVLGIHPMLFLRVFQMCMWRHPQNAPLPYKG 442

Query: 372 YRDEDWEDNDGALNTISMTHPRIPTEHPNRLVVDDSDCHPLQPGIWYYKIIEADHILFIV 431
           YRDEDWEDNDGALNTISMTHPRIPTEHPNRLVVDDSDCHPLQPGIWYYKIIEADHILFIV
Sbjct: 443 YRDEDWEDNDGALNTISMTHPRIPTEHPNRLVVDDSDCHPLQPGIWYYKIIEADHILFIV 502

Query: 432 NRERAGVQFDLLYDGIFQRCRKHAFRRSPPTVPNESSQSQ 471
           NRERAGVQFDLLYDGIFQRCRKHAFRRSPPTVPNESSQSQ
Sbjct: 503 NRERAGVQFDLLYDGIFQRCRKHAFRRSPPTVPNESSQSQ 542



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.142    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,381,566
Number of extensions: 688565
Number of successful extensions: 1038
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 2
Length of query: 471
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 367
Effective length of database: 11,605,545
Effective search space: 4259235015
Effective search space used: 4259235015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)