Os05g0406100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Inosine/uridine-preferring nucleoside hydrolase domain containing protein.
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Os05g0406100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Inosine/uridine-preferring nucleoside hydrolase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.39 | 0.648 | 9.58 | -2.79 | 0.77 | -1.64 | -0.813 | 0.621 | -0.109 | 19.6 | 81 | 1414 | -- | -- |
| 190.67 | 0.643 | 9.57 | -2.74 | 0.775 | -1.59 | -0.832 | -- | -0.0968 | 19.4 | 80.72 | 1392 | -- | -- |
| 191.84 | 0.645 | 9.58 | -2.76 | 0.737 | -1.66 | -- | 0.706 | -0.125 | 20.2 | 81 | 1463 | -- | -- |
| 192.27 | 0.646 | 9.57 | -2.72 | 0.766 | -1.6 | -- | -- | -0.101 | 19.9 | 80.3 | 1416 | -- | -- |
| 196.6 | 0.653 | 9.56 | -2.88 | -- | -1.44 | -- | 1.32 | -0.135 | -- | 76 | 2009 | -- | -- |
| 222.53 | 0.699 | 9.55 | -2.71 | 0.723 | -- | -0.834 | -- | -0.000761 | 19.6 | -- | -- | -- | -- |
| 224.06 | 0.701 | 9.55 | -2.69 | 0.721 | -- | -- | -- | -0.00392 | 20 | -- | -- | -- | -- |
| 198.68 | 0.656 | 9.56 | -2.79 | -- | -1.56 | -- | -- | -0.113 | -- | 76 | 2108 | -- | -- |
| 360.34 | 0.884 | 9.57 | -- | 0.478 | -1.91 | -- | -- | -0.131 | 18.8 | 86 | 2330 | -- | -- |
| 252.48 | 0.742 | 9.53 | -2.7 | -- | -- | -- | -- | -0.013 | -- | -- | -- | -- | -- |
| 414.95 | 0.953 | 9.48 | -- | 0.739 | -- | -- | -- | 0.296 | 19.8 | -- | -- | -- | -- |
| 369.48 | 0.895 | 9.57 | -- | -- | -2.21 | -- | -- | -0.149 | -- | 86.94 | 2162 | -- | -- |
| 444.5 | 0.984 | 9.47 | -- | -- | -- | -- | -- | 0.286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 181.10 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 2 | 181.57 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 9 | 182.94 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 12 | 183.09 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 13 | 183.15 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 15 | 183.17 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 33 | 184.03 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 41 | 184.31 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 42 | 184.33 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 44 | 184.39 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 15 |
| 57 | 184.73 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 59 | 184.76 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 9 |
| 62 | 184.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 63 | 184.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 64 | 184.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 11 |
| 70 | 184.84 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 72 | 184.85 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 75 | 184.87 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 77 | 184.91 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 112 | 185.35 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 113 | 185.40 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 115 | 185.45 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 125 | 185.59 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 134 | 185.69 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 1 |
| 152 | 185.87 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 7 |
| 154 | 185.89 | humidity | 80 | 1440 | > th | dose independent | sin | 15 | NA |
| 169 | 186.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 180 | 186.26 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 14 |
| 297 | 187.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 299 | 187.20 | humidity | 80 | 720 | < th | dose independent | sin | 15 | NA |
| 314 | 187.30 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |
| 331 | 187.38 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 12 |
| 407 | 187.78 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 6 |
| 436 | 187.92 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 442 | 187.95 | humidity | 50 | 720 | > th | dose dependent | sin | 13 | NA |
| 458 | 188.01 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 495 | 188.19 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 530 | 188.31 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 643 | 188.84 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 12 |
| 669 | 188.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 675 | 188.98 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 790 | 189.50 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 796 | 189.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 821 | 189.56 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 830 | 189.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 838 | 189.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 839 | 189.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 858 | 189.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 897 | 189.84 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 901 | 189.85 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 19 |