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Os05g0390600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.68 (0.0434) R2 : 0.839
β1 : -1.75 (0.159) R2dD : 0.0452 R2D : 0.0411
β2 : 3.82 (0.112) R2dC : 0.486 R2C : 0.662
β3 : 3.22 (0.189) R2dE : 0.121 R2E : 0.292
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.503 (0.0928) R2dN8 : 0.0138 R2N8 : 0.0155
σ : 0.81
deviance : 302.74
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_____
C
peak time of C : 0.882
E
wheather : radiation
threshold : 3.786
memory length : 61
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 20
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
297.11 0.81 7.68 -1.71 3.75 3.16 0.892 1.35 0.51 0.741 3.349 71 20.2 --
297.49 0.803 7.67 -1.75 3.77 3.23 1.12 -- 0.538 0.817 3.851 61 20 --
299.38 0.806 7.68 -1.73 3.78 3.21 -- 1.79 0.51 0.819 3.513 65 20 --
302.74 0.81 7.68 -1.75 3.82 3.22 -- -- 0.503 0.882 3.786 61 20 --
403.1 0.935 7.64 -1.67 -- 4.41 -- 1.4 0.427 -- 12.04 16 3.31 --
450.41 0.995 7.7 -1.69 4.65 -- 1.54 -- 0.363 1.56 -- -- -- --
459.88 1 7.7 -1.74 4.65 -- -- -- 0.354 1.56 -- -- -- --
399.31 0.931 7.62 -1.75 -- 4.37 -- -- 0.554 -- 14.22 27 3.58 --
384.2 0.913 7.64 -- 3.87 3.1 -- -- 0.668 0.983 3.39 61 19.7 --
1784.79 1.97 7.64 -1.55 -- -- -- -- 0.456 -- -- -- -- --
539.38 1.09 7.66 -- 4.62 -- -- -- 0.548 1.54 -- -- -- --
479.82 1.02 7.57 -- -- 4.34 -- -- 0.759 -- 14.71 26 3.62 --
1848.19 2.01 7.6 -- -- -- -- -- 0.628 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 310.50 radiation 1.0 90 < th dose independent sin 2 NA
2 310.85 radiation 1.0 90 > th dose independent sin 2 NA
4 313.17 radiation 1.0 90 < th dose dependent sin 2 NA
6 315.18 radiation 20.0 10 < th dose dependent rect. 13 17
8 318.07 radiation 10.0 10 < th dose dependent rect. 7 23
12 321.28 radiation 1.0 90 < th dose independent rect. 2 17
13 321.72 radiation 20.0 10 < th dose dependent rect. 10 20
30 326.15 radiation 1.0 90 > th dose independent rect. 5 12
45 327.23 radiation 1.0 90 < th dose dependent rect. 2 17
48 327.89 radiation 10.0 30 < th dose dependent rect. 13 20
64 328.17 radiation 10.0 30 < th dose dependent rect. 10 23
81 330.25 radiation 10.0 30 < th dose dependent rect. 15 23
82 330.31 radiation 10.0 30 < th dose dependent no NA NA
115 334.31 radiation 1.0 90 < th dose independent rect. 2 14
156 337.43 radiation 10.0 30 < th dose dependent rect. 17 23
163 338.38 radiation 10.0 30 < th dose dependent rect. 2 12
174 339.22 radiation 1.0 90 < th dose independent rect. 2 6
196 340.70 radiation 1.0 10 > th dose independent rect. 6 10
261 344.40 radiation 10.0 30 < th dose dependent rect. 2 8
311 346.64 radiation 10.0 10 < th dose independent rect. 13 17
409 350.94 radiation 20.0 10 < th dose dependent rect. 2 4
451 352.26 temperature 15.0 720 > th dose independent rect. 17 2
476 353.63 precipitation 0.1 270 < th dose independent rect. 4 11
477 353.63 precipitation 0.1 270 < th dose dependent rect. 4 11
488 354.14 radiation 10.0 30 < th dose dependent rect. 23 23
491 354.23 radiation 10.0 30 < th dose dependent rect. 21 23
494 354.53 radiation 10.0 10 < th dose independent rect. 10 20
501 354.84 precipitation 0.1 720 < th dose independent rect. 5 2
502 354.84 precipitation 0.1 10 < th dose independent rect. 6 20
503 354.84 precipitation 0.1 720 < th dose dependent rect. 5 2
504 354.84 precipitation 0.1 10 < th dose dependent rect. 6 20
527 355.60 wind 9.0 10 < th dose independent rect. 2 4
528 355.60 temperature 10.0 10 > th dose independent rect. 2 4
530 355.60 temperature 30.0 10 < th dose independent rect. 2 4
531 355.60 humidity 50.0 10 > th dose independent rect. 2 4
534 355.60 atmosphere 995.0 10 > th dose independent rect. 2 4
535 355.60 atmosphere 1010.0 10 < th dose independent rect. 2 4
537 355.60 radiation 20.0 10 < th dose independent rect. 2 4
540 355.60 temperature 10.0 10 > th dose independent rect. 6 20
543 355.67 atmosphere 1015.0 720 < th dose independent rect. 17 2
544 355.67 radiation 30.0 720 < th dose independent rect. 17 2
546 355.67 temperature 10.0 720 > th dose independent rect. 19 22
548 355.71 temperature 10.0 10 > th dose dependent rect. 2 4
559 356.20 wind 9.0 10 < th dose independent rect. 6 20
572 356.51 radiation 10.0 10 < th dose dependent rect. 1 23
579 356.70 wind 9.0 30 < th dose dependent rect. 6 20
610 357.45 humidity 90.0 10 < th dose independent rect. 6 10
613 357.48 wind 7.0 720 < th dose independent rect. 5 2
615 357.48 temperature 10.0 720 > th dose independent rect. 5 2
616 357.48 temperature 30.0 720 < th dose independent rect. 5 2
617 357.48 humidity 50.0 720 > th dose independent rect. 5 2
619 357.48 atmosphere 995.0 720 > th dose independent rect. 5 2
620 357.48 atmosphere 1015.0 720 < th dose independent rect. 5 2
621 357.48 radiation 40.0 720 < th dose independent rect. 5 2
622 357.48 temperature 10.0 720 > th dose independent rect. 7 22
625 357.53 precipitation 0.1 720 < th dose independent rect. 19 22
626 357.53 precipitation 0.1 720 < th dose dependent rect. 19 22
628 357.57 radiation 10.0 10 < th dose independent rect. 7 23
630 357.63 temperature 15.0 10 > th dose independent rect. 16 14
651 357.99 humidity 50.0 10 > th dose dependent rect. 2 4
655 358.12 wind 9.0 720 < th dose independent rect. 17 2
657 358.22 wind 9.0 1440 < th dose independent rect. 3 4
658 358.22 temperature 10.0 1440 > th dose independent rect. 3 4
661 358.22 temperature 30.0 1440 < th dose independent rect. 3 4
665 358.22 humidity 50.0 1440 > th dose independent rect. 3 4
670 358.22 atmosphere 995.0 1440 > th dose independent rect. 3 4
671 358.22 radiation 40.0 1440 < th dose independent rect. 3 4
675 358.22 temperature 10.0 1440 > th dose independent rect. 7 20
694 358.79 atmosphere 995.0 10 > th dose dependent rect. 2 4
730 359.66 radiation 40.0 270 < th dose independent rect. 15 13
744 359.97 precipitation 0.1 720 < th dose independent rect. 17 2
745 359.97 precipitation 0.1 720 < th dose dependent rect. 17 2
751 360.08 precipitation 0.1 30 < th dose independent rect. 2 4
752 360.08 precipitation 0.1 30 < th dose dependent rect. 2 4
754 360.17 precipitation 0.1 270 < th dose independent rect. 3 22
755 360.17 precipitation 0.1 270 < th dose dependent rect. 3 22
756 360.23 humidity 50.0 10 > th dose independent rect. 16 14
770 360.65 temperature 10.0 270 > th dose independent rect. 4 11
771 360.65 atmosphere 1015.0 270 < th dose independent rect. 4 11
772 360.65 temperature 10.0 270 > th dose independent rect. 15 13
787 361.02 wind 9.0 90 < th dose independent rect. 3 2
788 361.02 temperature 10.0 90 > th dose independent rect. 3 2
790 361.02 temperature 30.0 90 < th dose independent rect. 3 2
791 361.02 humidity 50.0 90 > th dose independent rect. 3 2
794 361.02 atmosphere 995.0 90 > th dose independent rect. 3 2
795 361.02 atmosphere 1010.0 90 < th dose independent rect. 3 2
797 361.02 radiation 20.0 90 < th dose independent rect. 3 2
800 361.02 temperature 10.0 90 > th dose independent rect. 5 22
811 361.13 radiation 40.0 720 < th dose dependent rect. 17 2
812 361.17 precipitation 0.1 10 < th dose independent rect. 6 10
814 361.17 precipitation 0.1 10 < th dose dependent rect. 6 10
821 361.32 atmosphere 995.0 10 > th dose independent rect. 16 14
870 361.86 atmosphere 1015.0 1440 < th dose independent rect. 3 4
883 361.91 radiation 1.0 270 < th dose independent rect. 1 2
890 361.91 temperature 10.0 270 > th dose independent rect. 3 22
891 361.91 radiation 1.0 270 < th dose dependent rect. 1 2
905 362.00 precipitation 0.1 270 < th dose independent rect. 19 13
906 362.00 precipitation 0.1 270 < th dose dependent rect. 19 13
912 362.10 wind 9.0 10 < th dose dependent rect. 2 4
916 362.16 wind 9.0 270 < th dose independent rect. 15 13
919 362.23 precipitation 0.1 270 < th dose independent rect. 1 2
921 362.23 precipitation 0.1 270 < th dose dependent rect. 1 2
923 362.26 temperature 10.0 10 > th dose independent rect. 6 10
925 362.26 atmosphere 1015.0 10 < th dose independent rect. 6 10
933 362.29 wind 9.0 10 < th dose independent rect. 16 14
944 362.53 wind 9.0 10 < th dose independent rect. 6 10
949 362.60 radiation 1.0 90 < th dose independent rect. 21 23
961 362.84 wind 9.0 270 < th dose independent rect. 4 11
986 363.11 wind 9.0 90 < th dose independent rect. 5 22