BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0390600 Os05g0390600|Os05g0390600
         (385 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0390600  Conserved hypothetical protein                      303   2e-82

>Os05g0390600 Conserved hypothetical protein
          Length = 385

 Score =  303 bits (775), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 186/356 (52%), Positives = 186/356 (52%)

Query: 30  FTVTLSPASKQRSAAQLCPADELFYKGQLLPLQLSPRISMVRTLLLXXXXXXXXXXXXXX 89
           FTVTLSPASKQRSAAQLCPADELFYKGQLLPLQLSPRISMVRTLLL              
Sbjct: 30  FTVTLSPASKQRSAAQLCPADELFYKGQLLPLQLSPRISMVRTLLLSSASTSSASASDST 89

Query: 90  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEDDRHLAXXXXXXGVAASFA 149
                                                  TEDDRHLA      GVAASFA
Sbjct: 90  SNSSSSRDSNGSTSSSFSADCAALLLPDSAASSSRPSSATEDDRHLAPPPPPPGVAASFA 149

Query: 150 AKRTGKQYLSSFATRFSSVFHRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 209
           AKRTGKQYLSSFATRFSSVFHRGG                                    
Sbjct: 150 AKRTGKQYLSSFATRFSSVFHRGGAPAPAAAAANAKKPPSKSLAKEVIKKYAKKVKPLYE 209

Query: 210 XLSQIPKXXXXXXXXXXXXXXXXXXXXXFSFSMRKKRGDDDHXXXXXXXXXXXXXEVGGG 269
            LSQIPK                     FSFSMRKKRGDDDH             EVGGG
Sbjct: 210 KLSQIPKNQSNSSGQPLQQQQQQGLKKPFSFSMRKKRGDDDHAAAAPAAAAAVAAEVGGG 269

Query: 270 GKYAHSNSFSGNLRFPRQKXXXXXXXXXXXXXXXXXGLLTXXXXXXXXXXXXXXXXXXXX 329
           GKYAHSNSFSGNLRFPRQK                 GLLT                    
Sbjct: 270 GKYAHSNSFSGNLRFPRQKRCAASCPSSMRSSPSHSGLLTFGGAGGVGFPDVPAAAAAAM 329

Query: 330 XXXISVGPVSLSTASSMEELQSAIEGAIAHCKSTMGGAVTMCSRKAAAAADEICAF 385
              ISVGPVSLSTASSMEELQSAIEGAIAHCKSTMGGAVTMCSRKAAAAADEICAF
Sbjct: 330 SGGISVGPVSLSTASSMEELQSAIEGAIAHCKSTMGGAVTMCSRKAAAAADEICAF 385



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,957,564
Number of extensions: 135075
Number of successful extensions: 365
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 282
Effective length of database: 11,657,759
Effective search space: 3287488038
Effective search space used: 3287488038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)