Os05g0386900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os05g0386900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 200.58 | 0.665 | 6.83 | -2.34 | 0.322 | -0.624 | 1.66 | -0.592 | -0.0336 | 19.1 | 59.33 | 1733 | -- | -- |
| 201.26 | 0.661 | 6.83 | -2.37 | 0.327 | -0.655 | 1.67 | -- | -0.0189 | 19.1 | 59.36 | 1730 | -- | -- |
| 207.2 | 0.67 | 6.82 | -2.37 | 0.324 | -0.618 | -- | -0.779 | -0.0283 | 18.2 | 59.03 | 1780 | -- | -- |
| 207.89 | 0.672 | 6.82 | -2.35 | 0.338 | -0.704 | -- | -- | -0.00264 | 18.3 | 62 | 1732 | -- | -- |
| 211.78 | 0.678 | 6.81 | -2.37 | -- | -0.696 | -- | -0.64 | -0.011 | -- | 63 | 1836 | -- | -- |
| 216.87 | 0.69 | 6.87 | -2.22 | 0.353 | -- | 1.73 | -- | -0.194 | 19.3 | -- | -- | -- | -- |
| 224.52 | 0.702 | 6.87 | -2.26 | 0.371 | -- | -- | -- | -0.188 | 18.4 | -- | -- | -- | -- |
| 212.49 | 0.679 | 6.82 | -2.37 | -- | -0.748 | -- | -- | 0.00918 | -- | 63.35 | 1781 | -- | -- |
| 289.45 | 0.792 | 6.78 | -- | 0.273 | -1.75 | -- | -- | -0.00707 | 16 | 64.82 | 29399 | -- | -- |
| 231.66 | 0.711 | 6.86 | -2.27 | -- | -- | -- | -- | -0.196 | -- | -- | -- | -- | -- |
| 358.86 | 0.886 | 6.81 | -- | 0.402 | -- | -- | -- | 0.063 | 18.1 | -- | -- | -- | -- |
| 293.03 | 0.797 | 6.82 | -- | -- | -1.86 | -- | -- | -0.0265 | -- | 64.89 | 29310 | -- | -- |
| 367.26 | 0.894 | 6.81 | -- | -- | -- | -- | -- | 0.0552 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.32 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 2 | 183.44 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 9 | 184.01 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 11 | 184.13 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 15 | 184.19 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 17 | 184.22 | temperature | 30 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 37 | 184.28 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 41 | 184.31 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 42 | 184.33 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 52 | 184.45 | temperature | 30 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 66 | 184.47 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 86 | 184.61 | temperature | 30 | 14400 | > th | dose dependent | sin | 12 | NA |
| 124 | 184.84 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 20 |
| 147 | 184.95 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 154 | 184.98 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 187 | 185.08 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 189 | 185.09 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 212 | 185.13 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 302 | 185.25 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 412 | 185.27 | temperature | 30 | 14400 | < th | dose independent | sin | 10 | NA |
| 468 | 185.41 | temperature | 30 | 14400 | > th | dose independent | sin | 10 | NA |
| 480 | 185.49 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 489 | 185.50 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 504 | 185.57 | temperature | 30 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 507 | 185.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 510 | 185.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 516 | 185.61 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 519 | 185.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 525 | 185.64 | temperature | 30 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 527 | 185.65 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 528 | 185.65 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 567 | 185.72 | temperature | 25 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 663 | 185.99 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 705 | 186.09 | temperature | 25 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 861 | 186.69 | temperature | 25 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 896 | 186.84 | temperature | 25 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 934 | 187.03 | temperature | 30 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 989 | 187.21 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 996 | 187.21 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 11 |