Os05g0375600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein chain release factor, RF-1/RF-2 family protein.
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Os05g0375600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein chain release factor, RF-1/RF-2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.86 | 0.6 | 10.3 | -3.38 | 0.902 | 1.74 | -0.554 | 2.39 | -1.4 | 1.41 | 18.6 | 3567 | -- | -- |
| 167.97 | 0.604 | 10.2 | -3.13 | 0.895 | 1.19 | -0.547 | -- | -1.35 | 1.44 | 18.6 | 3748 | -- | -- |
| 164.08 | 0.597 | 10.3 | -3.37 | 0.905 | 1.76 | -- | 2.46 | -1.4 | 1.5 | 18.61 | 3566 | -- | -- |
| 169.54 | 0.606 | 10.2 | -3.16 | 0.912 | 1.08 | -- | -- | -1.35 | 1.56 | 18.62 | 3797 | -- | -- |
| 212.71 | 0.679 | 10.3 | -3.37 | -- | 1.66 | -- | 2.26 | -1.39 | -- | 18.6 | 3210 | -- | -- |
| 183.28 | 0.635 | 10.2 | -3.74 | 0.86 | -- | -0.596 | -- | -1.57 | 1.43 | -- | -- | -- | -- |
| 184.68 | 0.636 | 10.2 | -3.72 | 0.862 | -- | -- | -- | -1.57 | 1.55 | -- | -- | -- | -- |
| 216.65 | 0.686 | 10.2 | -3.21 | -- | 0.978 | -- | -- | -1.34 | -- | 19.2 | 2986 | -- | -- |
| 215.71 | 0.684 | 10 | -- | 0.901 | 2.9 | -- | -- | -0.461 | 1.51 | 18.43 | 47520 | -- | -- |
| 230.18 | 0.709 | 10.2 | -3.69 | -- | -- | -- | -- | -1.55 | -- | -- | -- | -- | -- |
| 549.5 | 1.1 | 10.2 | -- | 0.797 | -- | -- | -- | -1.15 | 1.4 | -- | -- | -- | -- |
| 265.35 | 0.759 | 9.99 | -- | -- | 2.85 | -- | -- | -0.458 | -- | 18.42 | 47520 | -- | -- |
| 588.56 | 1.13 | 10.1 | -- | -- | -- | -- | -- | -1.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 155.30 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 3 | 155.63 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 4 | 155.80 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 5 | 155.81 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 6 | 155.91 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 7 | 155.97 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 16 | 156.53 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 19 | 156.66 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 22 | 156.92 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 27 | 157.15 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 41 | 157.53 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 56 | 157.82 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 60 | 157.86 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 91 | 158.39 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 96 | 158.44 | wind | 1.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 97 | 158.44 | wind | 1.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 135 | 158.84 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 11 |
| 149 | 158.98 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 181 | 159.22 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 195 | 159.38 | wind | 1.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 221 | 159.64 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 244 | 159.77 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 315 | 160.25 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 360 | 160.52 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 375 | 160.60 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 378 | 160.62 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 19 |
| 401 | 160.71 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 426 | 160.81 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 462 | 160.89 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 498 | 161.06 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 545 | 161.25 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 564 | 161.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 566 | 161.30 | wind | 1.0 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 582 | 161.37 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 588 | 161.40 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 603 | 161.41 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 612 | 161.45 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 16 | 10 |
| 659 | 161.57 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 660 | 161.58 | radiation | 20.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 667 | 161.60 | radiation | 40.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 711 | 161.73 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 718 | 161.75 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 726 | 161.77 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 749 | 161.79 | radiation | 20.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 770 | 161.82 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 782 | 161.82 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 783 | 161.83 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 808 | 161.86 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 824 | 161.86 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 19 |
| 849 | 161.93 | wind | 1.0 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 854 | 161.93 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 855 | 161.94 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 902 | 161.97 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 975 | 162.03 | radiation | 20.0 | 43200 | > th | dose independent | no | NA | NA |