BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0375600 Os05g0375600|Os05g0375600
(407 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0375600 Protein chain release factor, RF-1/RF-2 family... 776 0.0
Os07g0546600 Similar to Translation releasing factor RF-2 233 2e-61
Os03g0305700 Similar to Peptide chain release factor 2 (Fra... 114 1e-25
Os05g0277300 Peptide chain release factor 1 family protein 71 2e-12
>Os05g0375600 Protein chain release factor, RF-1/RF-2 family protein
Length = 407
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/378 (100%), Positives = 378/378 (100%)
Query: 30 GRVAALPADGRGDGASTAASYKELGLYSLKKRIEDAVVRVETTASSALEMEEARRIRQEE 89
GRVAALPADGRGDGASTAASYKELGLYSLKKRIEDAVVRVETTASSALEMEEARRIRQEE
Sbjct: 30 GRVAALPADGRGDGASTAASYKELGLYSLKKRIEDAVVRVETTASSALEMEEARRIRQEE 89
Query: 90 VLRGRNLWDNPAKSHETLSALADAIRVVDHLKDLRYKAEEAKLISQLSEMDVINVELFKQ 149
VLRGRNLWDNPAKSHETLSALADAIRVVDHLKDLRYKAEEAKLISQLSEMDVINVELFKQ
Sbjct: 90 VLRGRNLWDNPAKSHETLSALADAIRVVDHLKDLRYKAEEAKLISQLSEMDVINVELFKQ 149
Query: 150 AYKTSVDATEFLDRYQMYKLLKGPYDKEGACIIVTAGSDERIFCMYSSWARKQGCKDGLV 209
AYKTSVDATEFLDRYQMYKLLKGPYDKEGACIIVTAGSDERIFCMYSSWARKQGCKDGLV
Sbjct: 150 AYKTSVDATEFLDRYQMYKLLKGPYDKEGACIIVTAGSDERIFCMYSSWARKQGCKDGLV 209
Query: 210 EKITSTSGRVWTAAIEIESEYMFGTLTGEKGTHRMIYPSVDNAGTYEATSARVDIIPLFL 269
EKITSTSGRVWTAAIEIESEYMFGTLTGEKGTHRMIYPSVDNAGTYEATSARVDIIPLFL
Sbjct: 210 EKITSTSGRVWTAAIEIESEYMFGTLTGEKGTHRMIYPSVDNAGTYEATSARVDIIPLFL 269
Query: 270 DRPVNLHLDENDLEISPSPSDHKRRDHRNSAIRVQHIRTGVTAESSGERSYFANKMKAIS 329
DRPVNLHLDENDLEISPSPSDHKRRDHRNSAIRVQHIRTGVTAESSGERSYFANKMKAIS
Sbjct: 270 DRPVNLHLDENDLEISPSPSDHKRRDHRNSAIRVQHIRTGVTAESSGERSYFANKMKAIS 329
Query: 330 RLKAKLLVISRELRSSNLKTIKRQTVEELYSRETRRYKFGPQKLVHDLNTGLQLSELNSV 389
RLKAKLLVISRELRSSNLKTIKRQTVEELYSRETRRYKFGPQKLVHDLNTGLQLSELNSV
Sbjct: 330 RLKAKLLVISRELRSSNLKTIKRQTVEELYSRETRRYKFGPQKLVHDLNTGLQLSELNSV 389
Query: 390 LDGDIDPFIRGRIVSRLG 407
LDGDIDPFIRGRIVSRLG
Sbjct: 390 LDGDIDPFIRGRIVSRLG 407
>Os07g0546600 Similar to Translation releasing factor RF-2
Length = 460
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 218/377 (57%), Gaps = 14/377 (3%)
Query: 44 ASTAASYKELGLYSLKKRIEDAVVRV-ETTASSALEMEEARRIRQEEVLRGRNLWDNPAK 102
+S A + Y+L+K +E AV RV E S+ L+ E E+ +LWD+P+K
Sbjct: 74 SSEATEWAMQDFYALRKDVELAVARVSEVRQSAGLDQLEEEIASLEKKSADSSLWDDPSK 133
Query: 103 SHETLSALADAIRVVDHLKDLRYKAEEAKLISQLSE-MDVINVELFKQAYKTSVDATEFL 161
+ E L AL + V L DL+ + EEA+ I +L+E +D I+ L ++A K + L
Sbjct: 134 AQEILVALTEVKDRVKLLNDLKLQVEEAETIVKLTEELDSIDTGLLEEASKIIKALNKAL 193
Query: 162 DRYQMYKLLKGPYDKEGACIIVTAGSD--------ERIFCMYSSWARKQGCKDGLVEKIT 213
D ++M +LL GPYDKEGA I +TAG+ + + MY W KQ K +VEK
Sbjct: 194 DNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSP 253
Query: 214 STSGRVWTAAIEIESEYMFGTLTGEKGTHRMIYPSVDNA-GTYEATSARVDIIPLFLDRP 272
+ +A IE+E Y +G L+GEKGTHR++ S NA G + + A V+++PL +
Sbjct: 254 GEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLPEES 313
Query: 273 VNLHLDENDLEISPSPSDHKRRDHRN---SAIRVQHIRTGVTAESSGERSYFANKMKAIS 329
+++ + E DLEIS + + K + N +A+R+ HI TG+ + ERS ANK+KA+S
Sbjct: 314 MDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCTEERSQLANKIKALS 373
Query: 330 RLKAKLLVISRELRSSNLKTIKRQTVEELYSRETRRYKFGPQKLVHDLNTGLQLSELNSV 389
RLKAKLLVI+ E R+S +K I+ V+ + ++ R Y F P KLV D+ T + S++ V
Sbjct: 374 RLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTACETSDITGV 433
Query: 390 LDGDIDPFIRGRIVSRL 406
+DG++D FIR + +L
Sbjct: 434 MDGELDTFIRAYLKYKL 450
>Os03g0305700 Similar to Peptide chain release factor 2 (Fragment)
Length = 468
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 164/342 (47%), Gaps = 42/342 (12%)
Query: 84 RIRQEEVLRGR-NLWDNP------AKSHETLSALADAIR-----VVDHLKDLRYKAEEAK 131
R RQ V+ R +LWD+P ++ H L ++ +++H+ LR EE
Sbjct: 130 RSRQLSVVLERPDLWDDPVFAGKVSREHGELMGKIKSVNQFEQELMEHIDMLRLAREEDD 189
Query: 132 LISQLSEMDVINVELFKQAYKTSVDATEFLDRYQMYKLLKGPYDKEGACIIVTAGSD--- 188
+ M + E+ + A + ++A LL G D I V AG+
Sbjct: 190 NELETETMRAL-AEMRRSAKEKELNA-----------LLSGDNDSCSCFIEVQAGAGGTE 237
Query: 189 -----ERIFCMYSSWARKQGCKDGLVEKITSTSGRVWTAAIEIESEYMFGTLTGEKGTHR 243
+ MYSSWA+++G ++E++ + A I+++ EY FG E G HR
Sbjct: 238 SMDWAAMVMNMYSSWAQRRGYTVSIIEEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHR 297
Query: 244 MIYPSVDNAGTYEATS-ARVDIIPLFLDRPVNLHLDENDLEISPSPSDHKRRDHRN---S 299
++ S ++G TS A V ++P+ D + ++DL I S H N S
Sbjct: 298 LVRISPFDSGKRRHTSFAAVAVVPILGDGSTRYQIKDSDLRIERFRSGGPGGQHANCTES 357
Query: 300 AIRVQHIRTGVTAESSGERSYFANKMKAISRLKAKL--LVISRELRSSNLKTIKRQTVEE 357
A+R+ HI TG+TA ERS NK A++ L+++L L I+R+ + + Q++ E
Sbjct: 358 AVRIVHIPTGITATCQNERSQHMNKASAMAVLQSRLDQLEIARQ---AQMNADHTQSLSE 414
Query: 358 L-YSRETRRYKFGPQKLVHDLNTGLQLSELNSVLDGDIDPFI 398
+ + + R Y P ++V DL T ++S+ +SVL+GD+D FI
Sbjct: 415 ISWGNQIRSYVLHPYRMVKDLRTNYEVSDPDSVLNGDLDDFI 456
>Os05g0277300 Peptide chain release factor 1 family protein
Length = 349
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 136/309 (44%), Gaps = 37/309 (11%)
Query: 116 VVDHLKDLRYKAEEAKLISQLSEMDVINVELFKQAYKTSVDATEFLDRYQMYKLLKG--P 173
+D +++LR K EE + + L V + + A + + A E + Q +KL + P
Sbjct: 35 TMDMIEELRSKQEEIEGLKSLMTNSVEEKDFREMAAQELLQALEEEKQLQ-HKLFRSLLP 93
Query: 174 YDK--EGACII-VTAGSDER--------IFCMYSSWARKQGCKDGLVEKITSTSGRVWTA 222
D+ E CI+ V AG+ IF MY +++K G K ++ + S A
Sbjct: 94 KDEADERDCILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFDAIDIMESALKGYKEA 153
Query: 223 AIEIESEYMFGTLTGEKGTHRMI-YPSVDNAGTYEATSARVDIIPLFLDRPVNLHLDEND 281
+ I +G L E G HR+ P + +G ++ V I+P + V++ L D
Sbjct: 154 SGTISGPGAYGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADE--VDVQLRNED 211
Query: 282 LEIS---PSPSDHKRRDHRNSAIRVQHIRTGVTAESSGERSYFANKMKAISRLKAKLLVI 338
L I S + + +SA+R+ H+ TG ERS NK KA+ L+A+L I
Sbjct: 212 LRIDTYRSGGSGGQSVNTTDSAVRITHVPTGTVVAIQDERSQHQNKAKALKVLRARLYEI 271
Query: 339 SR--------ELRSSNLKTIKRQTVEELYSRETRRYKFGPQKLVHDLNTGLQLSELNSVL 390
R +LRS + + R S R Y F PQ V D G+ + V+
Sbjct: 272 ERHRLHMDRSKLRSEQIGSGDR-------SERIRTYNF-PQGRVTDHRVGITHHSIEDVM 323
Query: 391 DGD-IDPFI 398
+G+ +D FI
Sbjct: 324 EGESLDIFI 332
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,720,002
Number of extensions: 463352
Number of successful extensions: 1514
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1508
Number of HSP's successfully gapped: 5
Length of query: 407
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 304
Effective length of database: 11,657,759
Effective search space: 3543958736
Effective search space used: 3543958736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)