Os05g0346500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 85 protein.
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Os05g0346500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 85 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.29 | 0.446 | 8.64 | -0.693 | 0.266 | 1.27 | 1.08 | 1.02 | -0.725 | 14.1 | 70 | 11311 | -- | -- |
| 87.09 | 0.435 | 8.67 | -0.751 | 0.103 | 1.49 | 0.957 | -- | -0.928 | 14.3 | 72.15 | 8990 | -- | -- |
| 90.92 | 0.444 | 8.64 | -0.621 | 0.186 | 1.32 | -- | 0.935 | -0.792 | 13.5 | 71.91 | 9019 | -- | -- |
| 90.6 | 0.443 | 8.67 | -0.758 | 0.14 | 1.49 | -- | -- | -0.925 | 11.5 | 72.33 | 9016 | -- | -- |
| 91.24 | 0.445 | 8.67 | -0.666 | -- | 1.47 | -- | 0.756 | -0.893 | -- | 71 | 9016 | -- | -- |
| 125.99 | 0.526 | 8.59 | -0.971 | 0.177 | -- | 1 | -- | -0.559 | 14.4 | -- | -- | -- | -- |
| 129.59 | 0.533 | 8.59 | -0.944 | 0.179 | -- | -- | -- | -0.554 | 13.7 | -- | -- | -- | -- |
| 91.78 | 0.446 | 8.67 | -0.76 | -- | 1.49 | -- | -- | -0.935 | -- | 72.45 | 9000 | -- | -- |
| 105.31 | 0.478 | 8.66 | -- | 0.15 | 1.63 | -- | -- | -0.886 | 11.7 | 72.94 | 9022 | -- | -- |
| 131.55 | 0.536 | 8.59 | -0.951 | -- | -- | -- | -- | -0.558 | -- | -- | -- | -- | -- |
| 153.08 | 0.579 | 8.56 | -- | 0.197 | -- | -- | -- | -0.448 | 13.8 | -- | -- | -- | -- |
| 105.72 | 0.479 | 8.69 | -- | -- | 1.61 | -- | -- | -1.02 | -- | 74.48 | 8909 | -- | -- |
| 155.43 | 0.582 | 8.57 | -- | -- | -- | -- | -- | -0.452 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.90 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 26 | 90.65 | humidity | 90 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 30 | 90.75 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 55 | 90.92 | humidity | 50 | 14400 | > th | dose dependent | rect. | 8 | 15 |
| 88 | 91.06 | humidity | 90 | 14400 | < th | dose dependent | rect. | 13 | 9 |
| 94 | 91.08 | humidity | 90 | 14400 | < th | dose dependent | rect. | 9 | 14 |
| 109 | 91.14 | humidity | 50 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 136 | 91.21 | humidity | 50 | 14400 | > th | dose dependent | sin | 20 | NA |
| 137 | 91.21 | humidity | 90 | 14400 | < th | dose dependent | sin | 19 | NA |
| 163 | 91.26 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 234 | 91.42 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 279 | 91.52 | humidity | 70 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 296 | 91.55 | humidity | 70 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 471 | 91.84 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 555 | 92.00 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 556 | 92.00 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 585 | 92.04 | humidity | 70 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 678 | 92.22 | humidity | 90 | 14400 | < th | dose dependent | no | NA | NA |
| 681 | 92.23 | humidity | 50 | 14400 | > th | dose dependent | no | NA | NA |
| 694 | 92.23 | humidity | 50 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 711 | 92.27 | humidity | 50 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 728 | 92.30 | humidity | 90 | 14400 | < th | dose dependent | rect. | 15 | 23 |
| 731 | 92.31 | humidity | 60 | 14400 | > th | dose dependent | rect. | 8 | 6 |
| 756 | 92.32 | humidity | 90 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 789 | 92.36 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 943 | 92.59 | humidity | 70 | 14400 | > th | dose independent | sin | 12 | NA |
| 964 | 92.62 | humidity | 70 | 14400 | > th | dose independent | sin | 16 | NA |