BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0346500 Os05g0346500|AK112067
(696 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11040.1 | chr3:3460143-3463312 FORWARD LENGTH=702 580 e-165
AT5G05460.1 | chr5:1615615-1618771 FORWARD LENGTH=681 574 e-164
AT3G61010.2 | chr3:22571352-22574179 REVERSE LENGTH=461 92 1e-18
>AT3G11040.1 | chr3:3460143-3463312 FORWARD LENGTH=702
Length = 701
Score = 580 bits (1494), Expect = e-165, Method: Compositional matrix adjust.
Identities = 298/699 (42%), Positives = 410/699 (58%), Gaps = 67/699 (9%)
Query: 25 PPFDASQPAPPISYPITTLAALASRAYLSEAGNFHLPFNXXXX--XXXXXXXXXXXXILA 82
P D +P+ PIS+PI L L SR+Y +FH FN +L
Sbjct: 16 PLLDLVKPSLPISFPIKALQDLKSRSYFD---SFHFQFNRSTVPFRRNSDCLPNRPRVLV 72
Query: 83 CHDFRGGYRDDAAPQGGHDPGAYALWHWHLIDVFVYFSHYLVTLPPPCWVNAAHLHGVKV 142
CHD +GGY DD QG + +A+WHW+L+D+FVYFSH LVT+PPPCW N AH HGVKV
Sbjct: 73 CHDMKGGYVDDKWVQGCENEAGFAIWHWYLMDIFVYFSHSLVTIPPPCWTNTAHRHGVKV 132
Query: 143 LGTFITEWEKGAEICEEMLATEASAQMYAERLTELAAYLGFDGWLINIEVKLDIQFIDNL 202
LGTFITEW++G C+EMLAT+ SAQMYAERL ELA LGFDGWLINIE +D + I N+
Sbjct: 133 LGTFITEWDEGKATCKEMLATKESAQMYAERLAELATALGFDGWLINIENDIDEEQIPNM 192
Query: 203 KEFINHLTKTMHAAVPGSLVIWYDAITIKGALDWQNKLNEYNKPFFDLCDGLFSNYTWKA 262
KEF++HL K +H + PG+LVIWYD++T++G L WQ++L E NKPFFDLCDG+F NYTWK
Sbjct: 193 KEFVSHLKKVLHLSTPGALVIWYDSVTVRGNLQWQDQLTELNKPFFDLCDGIFMNYTWKE 252
Query: 263 KYPQESAVVAGERKYDVYMGIDVYGRNTFGGGQWNTNVALDLLKKDDVSAAIFAPGWVYE 322
YP SA VAG+RK+DVYMGIDV+GR +FGGGQW N ALDLLK+++VSAAIFAPGWVYE
Sbjct: 253 SYPNLSAEVAGDRKFDVYMGIDVFGRGSFGGGQWTVNAALDLLKRNNVSAAIFAPGWVYE 312
Query: 323 TKQPPNFRTAQNRWWGLVQESWGVLQSYPKQLPFYSDFDQGHGYQVSIEGVKVYGAPWDN 382
T QPPNF TAQN+WW LV++SWG++Q+YP+ LPFYSDF+QG GY VS+EG ++ +PW N
Sbjct: 313 TAQPPNFHTAQNKWWSLVEKSWGIVQTYPQVLPFYSDFNQGFGYHVSLEGRQLSDSPWYN 372
Query: 383 ISCQSFQPMLKYAGDRG--LQTVINFE----------------------DEPYSGGNCVT 418
ISCQS QP+L++ D +Q ++ E + ++GG +
Sbjct: 373 ISCQSLQPLLEFNEDNKDIIQVTVDQEGKNVFDFSEQHLNNYYEYDSAREASFNGGGNIV 432
Query: 419 VKGSLQQNEIFSEQLFNGGLSMEGESVYVFYSVKAXXXXXXXXXXXXXXXXXXXXXXXXA 478
+G L+ + F+ +LF L + + + YSVK+ A
Sbjct: 433 FRGKLKGDAYFTTRLFKPHLQLSSSPITISYSVKSDETSNLGILLSFSSPSLETKSILVA 492
Query: 479 DDTAAFTRKKQHRKYGSYVKADKAEPHTPVHQNWVVYKATILPSAGFTLTGINIVCTMKT 538
+ R++ V + W V++A+++ G TLT I+ C
Sbjct: 493 PEDPI-------RRFDDMSLQCLTTSVQTVSE-WTVHEASLVMD-GHTLTEISAFCYR-- 541
Query: 539 TSGTDPETDGDGSSEAGANRSLHYHASLGHVSIRNTEETE-----FPPARSWVTEGDYIS 593
PE + +S + A LGH+S+++ + + PA SWV E +
Sbjct: 542 -----PE---------NSTKSAEFVALLGHISVKDHVQNQQNPEILLPASSWVIEAHNVE 587
Query: 594 WSNGSDESKLASLKISWELENKQQAPFMKYNVYVEKLTAD--------SNAKAPRIFLGV 645
G+ SK+ +K+ W ++ + + F +YNVY E + + K+ + LG+
Sbjct: 588 LVPGNSSSKILRVKLEWRQKDLEDSAFTRYNVYAENVKSTDLRPRKVLEKPKSETVLLGI 647
Query: 646 ASVQVFYVSDLEVPSEVTALKFFIQPCGRDGSCQGLHEC 684
A V +YV++L V S+V A++F +Q CG D S L E
Sbjct: 648 AHVPAYYVAELVVESDVKAVRFMVQACGEDASLGKLDEA 686
>AT5G05460.1 | chr5:1615615-1618771 FORWARD LENGTH=681
Length = 680
Score = 574 bits (1480), Expect = e-164, Method: Compositional matrix adjust.
Identities = 309/673 (45%), Positives = 414/673 (61%), Gaps = 40/673 (5%)
Query: 30 SQPAPPISYPITTLAALASRAYLSEAGNFHLPFNXXXX--XXXXXXXXXXXXILACHDFR 87
++P+ PIS+PI TL L SR+Y +FH PFN +L CHD +
Sbjct: 16 TKPSTPISFPIKTLQDLKSRSYFD---SFHYPFNRSSVPLRRNIGALSDRPRLLVCHDMK 72
Query: 88 GGYRDDAAPQGGHDPGAYALWHWHLIDVFVYFSHYLVTLPPPCWVNAAHLHGVKVLGTFI 147
GGY DD QG + YA+W W+L+DVFVYFSH LVTLPPPCW N AH HGVKVLGTFI
Sbjct: 73 GGYVDDKWVQGCGNNAGYAIWDWYLMDVFVYFSHSLVTLPPPCWTNTAHRHGVKVLGTFI 132
Query: 148 TEWEKGAEICEEMLATEASAQMYAERLTELAAYLGFDGWLINIEVKLDIQFIDNLKEFIN 207
TEW++G C+E+LAT+ SAQMYAERL ELAA LGFDGWLINIE +D I NL F++
Sbjct: 133 TEWDEGKATCKELLATKESAQMYAERLAELAAALGFDGWLINIENVIDEVQIPNLMVFVS 192
Query: 208 HLTKTMHAAVPGSLVIWYDAITIKGALDWQNKLNEYNKPFFDLCDGLFSNYTWKAKYPQE 267
HLTK MH++VPG LVIWYD++TI G L WQ++L E NKPFFD+CDG+F NYTWK YP+
Sbjct: 193 HLTKVMHSSVPGGLVIWYDSVTIDGHLAWQDQLTENNKPFFDICDGIFMNYTWKENYPKA 252
Query: 268 SAVVAGERKYDVYMGIDVYGRNTFGGGQWNTNVALDLLKKDDVSAAIFAPGWVYETKQPP 327
SA +AG+RKYDVYMGIDV+GR T+GGGQW NVALDLLK +VSAAIFAPGWVYET+QPP
Sbjct: 253 SAEIAGDRKYDVYMGIDVFGRGTYGGGQWTANVALDLLKSSNVSAAIFAPGWVYETEQPP 312
Query: 328 NFRTAQNRWWGLVQESWGVLQSYPKQLPFYSDFDQGHGYQVSIEGVKVYGAPWDNISCQS 387
+F TAQN+WW LV++SWG++Q+YP+ LPFYSDF+QG G S+ G K+ APW NISCQS
Sbjct: 313 DFYTAQNKWWSLVEKSWGIVQTYPQVLPFYSDFNQGLGSHTSLGGRKLSEAPWYNISCQS 372
Query: 388 FQPMLKYAGDRG---LQTVINFEDEPYSGGNCVTVKGSLQQNEIFSEQLFNGGLSMEGES 444
QP L++ R +Q ++ + Y+GG V+ +G L++N F+ +LF L +
Sbjct: 373 LQPFLEFNEGRNSETIQVTVDGREASYNGGGNVSFRGKLKRNAHFTARLFKPQLQLSAAP 432
Query: 445 VYVFYSVKAXXXXXXXXXXXXXXXXXXXXXXXXADDTAAFTRKKQHRKYGSYVKADKAEP 504
+ +F+SVK+ + + +R ++
Sbjct: 433 ISIFFSVKSDKRSELSILLHFSSPSQEKKSMLMVPNESI------NRFGDMFLPCLLTSK 486
Query: 505 HTPVHQNWVVYKATILPSAGFTLTGINIVCTMKTTSGTDPETDGDGSSEAGANRSLHYHA 564
T W V++ ++ G TLT I+ C S D T+ +L Y A
Sbjct: 487 QTT--SGWTVHETNLVLD-GHTLTEISAFC-----SRPDDLTE--------ETNTLEYFA 530
Query: 565 SLGHVSIRNTEETE-FPPARSWVTEGDYISWSNGSDESKLASLKISWELEN-KQQAPFMK 622
LGH+SI++ ++ + +P A SWV E ++ + G SK S K+ W L++ ++ + F K
Sbjct: 531 LLGHISIKSQQKAKVYPLASSWVIEAHHVKFVPGDSGSKTLSCKLEWRLKHPEEDSVFPK 590
Query: 623 YNVYVEKLTAD--------SNAKAPRIFLGVASVQVFYVSDLEVPSEVTALKFFIQPCGR 674
YNVY E L++ ++ ++FLG A V +YVS++ V S+V ++F +Q CG
Sbjct: 591 YNVYAENLSSSEYRPRKVMEEPRSEKVFLGTAHVDAYYVSEMVVGSDVKGVRFVVQTCGE 650
Query: 675 DGSCQGLHECPKF 687
DGS Q L P
Sbjct: 651 DGSWQELDASPNL 663
>AT3G61010.2 | chr3:22571352-22574179 REVERSE LENGTH=461
Length = 460
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 22/165 (13%)
Query: 302 LDLLKKDDVSAAIFAPGWVYETKQPPNFRTAQNRWWGLVQESWGVLQSYPKQLPFYSDFD 361
L LLK+++VSAA+FAPGWVYET Q PNF +AQN+WW LV++S G++Q+ K F
Sbjct: 3 LYLLKRNNVSAAMFAPGWVYETAQQPNFNSAQNKWWSLVEKSCGIVQTIHKSSLF----- 57
Query: 362 QGHGYQVSIEG-VKVYGAPWDNISCQSFQ------PMLKYA--GDRGLQTVINFEDE--- 409
++SI V ++ + N +F PML + G + F D
Sbjct: 58 ----TRISIRALVTMFHSKVSNSQIVAFSFILHRCPMLIFLIWGSLSSHLISVFSDSTRE 113
Query: 410 -PYSGGNCVTVKGSLQQNEIFSEQLFNGGLSMEGESVYVFYSVKA 453
++GG+ +T +G L+ + F+ +LF L + + + +SV +
Sbjct: 114 ASFNGGDYITFRGKLEGDAYFTTRLFKSHLHLSSSPITISFSVTS 158
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 21/134 (15%)
Query: 568 HVSIRNTEETEFPPARSWVTEGDYISWSNGSDESKLASLKISWELENKQQAPFMKYNVYV 627
HV + ET PA V E + G SK +K+ W ++ + + F +YNVY
Sbjct: 221 HVQYQQKPET-LLPASPLVIEAHNMELVPGYSGSKSLRVKLEWRQKDLEDSAFPRYNVYA 279
Query: 628 EKLTAD--------SNAKAPRIFLGVASVQVFYVSDLEVPSEVTALKFFIQPC------- 672
E + + ++ +FLGVA V +Y+++L V S+V ++F +P
Sbjct: 280 ENVKSTDLRPRKVLEKPRSETVFLGVAHVPSYYIAELVVESDVKGVRFVFKPVLKMLRFT 339
Query: 673 -----GRDGSCQGL 681
GR+ +C L
Sbjct: 340 YHGGAGRNRNCHFL 353
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,378,750
Number of extensions: 657294
Number of successful extensions: 1346
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1336
Number of HSP's successfully gapped: 6
Length of query: 696
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 591
Effective length of database: 8,227,889
Effective search space: 4862682399
Effective search space used: 4862682399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)