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Os05g0345400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.89 (0.0218) R2 : 0.492
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.11 (0.0566) R2dC : 0.429 R2C : 0.398
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.369 (0.0458) R2dN8 : 0.0934 R2N8 : 0.0628
σ : 0.41
deviance : 76.95
__
_____
C
peak time of C : 19
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.46 0.356 9.86 0.579 1.15 0.621 1.19 0.253 0.438 16.5 0.5454 38 -- --
57.79 0.354 9.86 0.584 1.15 0.62 1.05 -- 0.438 16.5 0.5499 38 -- --
60.7 0.363 9.86 0.596 1.16 0.636 -- -0.0323 0.434 16.4 0.5471 36 -- --
60.69 0.363 9.85 0.595 1.15 0.626 -- -- 0.446 16.5 0.55 36 -- --
117.81 0.508 9.85 0.54 -- 0.381 -- -0.0392 0.414 -- 0.8 18 -- --
66.55 0.382 9.87 0.567 1.11 -- 0.976 -- 0.428 18.9 -- -- -- --
69 0.389 9.87 0.549 1.11 -- -- -- 0.43 19 -- -- -- --
117.82 0.508 9.85 0.54 -- 0.38 -- -- 0.414 -- 0.8 18 -- --
69.99 0.39 9.85 -- 1.13 0.58 -- -- 0.4 16.6 0.54 36 -- --
134.13 0.541 9.85 0.526 -- -- -- -- 0.409 -- -- -- -- --
76.95 0.41 9.89 -- 1.11 -- -- -- 0.369 19 -- -- -- --
125.06 0.523 9.86 -- -- 0.381 -- -- 0.356 -- 0.95 32 -- --
141.43 0.555 9.86 -- -- -- -- -- 0.351 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.33 temperature 20.0 90 > th dose independent rect. 18 10
2 55.66 temperature 20.0 90 > th dose independent rect. 8 20
6 56.19 temperature 10.0 90 > th dose dependent rect. 8 20
23 57.07 temperature 10.0 270 > th dose dependent rect. 22 13
24 57.09 temperature 20.0 90 > th dose independent rect. 22 6
25 57.10 radiation 1.0 30 > th dose independent sin 11 NA
28 57.13 radiation 1.0 90 < th dose dependent rect. 5 23
29 57.14 radiation 1.0 30 < th dose independent sin 11 NA
31 57.17 radiation 1.0 90 < th dose independent rect. 5 23
34 57.25 radiation 1.0 30 > th dose independent rect. 10 23
36 57.32 radiation 1.0 30 > th dose independent rect. 14 19
38 57.34 radiation 1.0 30 > th dose independent rect. 12 21
39 57.40 temperature 10.0 90 > th dose dependent rect. 18 10
51 57.60 radiation 10.0 1440 > th dose independent rect. 11 2
55 57.62 radiation 1.0 30 < th dose dependent rect. 7 23
57 57.64 radiation 1.0 30 < th dose dependent sin 12 NA
63 57.68 radiation 1.0 30 < th dose dependent no NA NA
64 57.68 radiation 1.0 30 < th dose dependent rect. 13 19
79 57.68 radiation 1.0 30 < th dose dependent rect. 15 23
82 57.70 radiation 1.0 30 < th dose dependent rect. 17 23
85 57.73 humidity 50.0 90 > th dose dependent rect. 17 11
86 57.73 humidity 50.0 30 > th dose dependent rect. 9 19
88 57.74 radiation 1.0 90 < th dose independent rect. 7 21
90 57.76 humidity 50.0 720 > th dose dependent rect. 22 5
93 57.78 radiation 1.0 30 > th dose independent rect. 5 4
108 57.80 precipitation 0.1 270 < th dose independent rect. 2 13
109 57.80 precipitation 0.1 270 < th dose dependent rect. 2 13
124 57.82 radiation 1.0 30 < th dose independent rect. 18 22
127 57.84 radiation 1.0 720 > th dose independent rect. 10 6
129 57.85 radiation 1.0 30 < th dose dependent rect. 13 17
135 57.87 wind 1.0 270 < th dose dependent rect. 24 1
136 57.87 radiation 10.0 1440 < th dose dependent rect. 11 3
141 57.91 wind 5.0 90 < th dose independent rect. 4 4
154 57.95 wind 5.0 270 < th dose independent rect. 4 1
162 57.98 humidity 70.0 30 > th dose dependent rect. 9 19
165 57.99 radiation 20.0 90 < th dose dependent rect. 17 11
168 58.01 radiation 1.0 30 < th dose dependent rect. 15 17
181 58.03 temperature 20.0 270 > th dose independent rect. 23 2
182 58.03 radiation 1.0 90 < th dose independent rect. 9 19
184 58.04 radiation 1.0 30 < th dose independent rect. 18 20
194 58.07 radiation 1.0 90 < th dose independent rect. 12 16
201 58.08 temperature 20.0 270 > th dose dependent rect. 7 3
206 58.09 radiation 10.0 90 < th dose dependent rect. 13 15
208 58.11 wind 7.0 90 < th dose independent rect. 8 20
213 58.12 humidity 50.0 10 > th dose dependent rect. 18 11
241 58.16 wind 9.0 270 < th dose independent rect. 5 23
246 58.17 radiation 1.0 30 < th dose dependent rect. 15 15
250 58.18 radiation 10.0 90 < th dose dependent rect. 15 13
256 58.21 precipitation 0.1 270 > th dose independent rect. 2 2
280 58.25 wind 9.0 90 < th dose dependent rect. 4 4
291 58.27 precipitation 0.1 270 > th dose dependent rect. 2 2
294 58.28 precipitation 0.1 720 < th dose independent rect. 19 20
296 58.28 precipitation 0.1 720 < th dose dependent rect. 19 20
309 58.31 precipitation 0.1 90 < th dose independent rect. 4 4
311 58.31 precipitation 0.1 90 < th dose dependent rect. 4 4
313 58.32 radiation 1.0 30 < th dose independent rect. 18 14
320 58.33 atmosphere 995.0 90 > th dose independent rect. 8 20
323 58.34 radiation 1.0 30 > th dose independent rect. 5 13
334 58.35 radiation 1.0 30 < th dose independent no NA NA
336 58.35 radiation 1.0 30 < th dose independent rect. 13 19
351 58.35 radiation 1.0 30 < th dose independent rect. 15 23
353 58.36 radiation 1.0 30 > th dose independent no NA NA
414 58.38 humidity 70.0 90 > th dose dependent rect. 11 17
416 58.39 precipitation 0.1 270 < th dose independent rect. 4 1
417 58.39 precipitation 0.1 270 < th dose dependent rect. 4 1
421 58.41 wind 7.0 90 < th dose independent rect. 17 11
426 58.42 atmosphere 995.0 90 > th dose independent rect. 17 11
436 58.44 wind 7.0 10 < th dose dependent rect. 5 4
447 58.45 humidity 80.0 1440 > th dose dependent rect. 11 3
450 58.46 precipitation 0.1 720 < th dose independent rect. 19 12
451 58.46 precipitation 0.1 720 < th dose dependent rect. 19 12
453 58.47 temperature 10.0 90 > th dose independent rect. 4 4
455 58.47 temperature 30.0 90 < th dose independent rect. 4 4
456 58.47 humidity 50.0 90 > th dose independent rect. 4 4
458 58.47 atmosphere 995.0 90 > th dose independent rect. 4 4
459 58.47 atmosphere 1015.0 90 < th dose independent rect. 4 4
461 58.47 temperature 10.0 90 > th dose independent rect. 8 20
464 58.47 wind 9.0 270 < th dose dependent rect. 4 1
469 58.49 radiation 10.0 90 < th dose independent rect. 17 11
470 58.49 humidity 50.0 720 > th dose dependent rect. 17 10
471 58.50 humidity 90.0 720 < th dose independent rect. 20 1
475 58.50 radiation 1.0 30 < th dose dependent rect. 21 23
482 58.52 radiation 40.0 90 < th dose independent rect. 4 4
492 58.53 humidity 50.0 90 > th dose independent rect. 17 11
519 58.57 radiation 1.0 30 < th dose dependent rect. 18 14
532 58.59 humidity 80.0 1440 > th dose independent rect. 11 3
546 58.62 atmosphere 1005.0 270 < th dose dependent rect. 1 1
549 58.63 humidity 50.0 720 > th dose dependent rect. 15 13
570 58.67 radiation 1.0 30 < th dose independent rect. 15 17
590 58.68 temperature 10.0 90 > th dose independent rect. 17 11
595 58.68 temperature 10.0 90 > th dose independent rect. 4 13
596 58.68 atmosphere 1015.0 90 < th dose independent rect. 4 13
602 58.69 temperature 20.0 270 > th dose independent rect. 22 13
658 58.75 humidity 80.0 90 > th dose dependent rect. 23 5
667 58.77 radiation 1.0 270 < th dose dependent rect. 4 1
672 58.78 atmosphere 1015.0 90 < th dose independent rect. 8 20
688 58.80 temperature 10.0 270 > th dose independent rect. 4 1
690 58.80 temperature 30.0 270 < th dose independent rect. 4 1
691 58.80 humidity 50.0 270 > th dose independent rect. 4 1
694 58.80 atmosphere 995.0 270 > th dose independent rect. 4 1
695 58.80 atmosphere 1010.0 270 < th dose independent rect. 4 1
697 58.80 radiation 20.0 270 < th dose independent rect. 4 1
701 58.80 temperature 10.0 270 > th dose independent rect. 5 23
707 58.81 radiation 40.0 270 < th dose dependent rect. 4 1
723 58.85 wind 9.0 10 < th dose independent rect. 9 20
724 58.85 atmosphere 995.0 10 > th dose independent rect. 9 20
739 58.87 radiation 1.0 270 < th dose independent rect. 4 1
754 58.89 humidity 50.0 90 > th dose independent rect. 8 20
774 58.92 precipitation 0.1 10 < th dose independent rect. 5 4
777 58.92 precipitation 0.1 10 < th dose dependent rect. 5 4
790 58.94 humidity 80.0 270 > th dose dependent rect. 23 2
814 58.98 temperature 30.0 270 < th dose dependent rect. 4 1
842 59.01 wind 1.0 270 < th dose independent rect. 23 3
843 59.01 humidity 80.0 1440 < th dose independent rect. 11 3
855 59.01 wind 9.0 90 < th dose independent rect. 4 13
881 59.04 radiation 1.0 30 < th dose independent rect. 21 23
885 59.05 wind 9.0 270 < th dose independent rect. 15 11
893 59.06 temperature 10.0 10 > th dose independent rect. 5 4
895 59.06 temperature 30.0 10 < th dose independent rect. 5 4
896 59.06 humidity 50.0 10 > th dose independent rect. 5 4
898 59.06 atmosphere 995.0 10 > th dose independent rect. 5 4
899 59.06 atmosphere 1015.0 10 < th dose independent rect. 5 4
900 59.06 temperature 10.0 10 > th dose independent rect. 9 20
913 59.07 humidity 50.0 10 > th dose independent rect. 9 20
932 59.10 humidity 60.0 14400 > th dose independent rect. 5 3
946 59.11 precipitation 0.1 720 < th dose independent rect. 19 3
951 59.11 precipitation 0.1 720 < th dose dependent rect. 19 3
958 59.12 temperature 30.0 90 < th dose independent rect. 4 13
973 59.15 wind 9.0 90 < th dose dependent rect. 17 11
975 59.16 humidity 90.0 30 > th dose independent rect. 22 6
977 59.16 precipitation 0.1 720 < th dose independent rect. 10 21
979 59.16 humidity 70.0 90 > th dose dependent rect. 15 13
980 59.16 precipitation 0.1 720 < th dose dependent rect. 10 21
988 59.18 radiation 30.0 720 < th dose independent rect. 15 4
990 59.18 temperature 30.0 10 < th dose independent rect. 18 11
1000 59.19 precipitation 0.1 10 < th dose independent rect. 5 13