BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0345400 Os05g0345400|AK073748
         (1016 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0345400  Tetratricopeptide-like helical domain containi...  1982   0.0  

>Os05g0345400 Tetratricopeptide-like helical domain containing protein
          Length = 1016

 Score = 1982 bits (5135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 964/998 (96%), Positives = 964/998 (96%)

Query: 1   MASKFGLAGGIPERRVRPIWDAVDSRQYXXXXXXXXXXXXXHPTSPYVLALKGLILERMG 60
           MASKFGLAGGIPERRVRPIWDAVDSRQY             HPTSPYVLALKGLILERMG
Sbjct: 1   MASKFGLAGGIPERRVRPIWDAVDSRQYKAALKLCTALLAKHPTSPYVLALKGLILERMG 60

Query: 61  KPDEALSVCLNAKEQLYSDNIFHFDDLTLSTLQIVFQRLERLDLATSCYEYACTKYPNNL 120
           KPDEALSVCLNAKEQLYSDNIFHFDDLTLSTLQIVFQRLERLDLATSCYEYACTKYPNNL
Sbjct: 61  KPDEALSVCLNAKEQLYSDNIFHFDDLTLSTLQIVFQRLERLDLATSCYEYACTKYPNNL 120

Query: 121 ELMMGLFNCYVREYSYVKQQHTAIKMYKTVGEERFLLWAICSIQLQVHFSIGGXXXXXXX 180
           ELMMGLFNCYVREYSYVKQQHTAIKMYKTVGEERFLLWAICSIQLQVHFSIGG       
Sbjct: 121 ELMMGLFNCYVREYSYVKQQHTAIKMYKTVGEERFLLWAICSIQLQVHFSIGGEKLLPLA 180

Query: 181 XXXXXXHITSHSLHEPEALALYISILEQQSKYDAALEVLSGDLGSLMGREEDKLRLQGRL 240
                 HITSHSLHEPEALALYISILEQQSKYDAALEVLSGDLGSLMGREEDKLRLQGRL
Sbjct: 181 EALLKKHITSHSLHEPEALALYISILEQQSKYDAALEVLSGDLGSLMGREEDKLRLQGRL 240

Query: 241 LAQACNYTAASEIYQKILESCPDDWESFLHYLGCLLEHDVNLPKSRTSEHPSSLPVDSAL 300
           LAQACNYTAASEIYQKILESCPDDWESFLHYLGCLLEHDVNLPKSRTSEHPSSLPVDSAL
Sbjct: 241 LAQACNYTAASEIYQKILESCPDDWESFLHYLGCLLEHDVNLPKSRTSEHPSSLPVDSAL 300

Query: 301 ALKTSLSDELVESRLASALSFVQKLQVNDTSDCVRGPHLASIEIERQRCRSGNPTDRKFI 360
           ALKTSLSDELVESRLASALSFVQKLQVNDTSDCVRGPHLASIEIERQRCRSGNPTDRKFI
Sbjct: 301 ALKTSLSDELVESRLASALSFVQKLQVNDTSDCVRGPHLASIEIERQRCRSGNPTDRKFI 360

Query: 361 EALINYFHRFGHLSCAASDVEIYLHMLSSDETTELLDTISRSFDASSLSVKGLGLAITTF 420
           EALINYFHRFGHLSCAASDVEIYLHMLSSDETTELLDTISRSFDASSLSVKGLGLAITTF
Sbjct: 361 EALINYFHRFGHLSCAASDVEIYLHMLSSDETTELLDTISRSFDASSLSVKGLGLAITTF 420

Query: 421 KVQELLGTFFSKSTTELQHIAKGMVEAFYKNLPLSRDLDPQESMHGEELLCMASSILVQL 480
           KVQELLGTFFSKSTTELQHIAKGMVEAFYKNLPLSRDLDPQESMHGEELLCMASSILVQL
Sbjct: 421 KVQELLGTFFSKSTTELQHIAKGMVEAFYKNLPLSRDLDPQESMHGEELLCMASSILVQL 480

Query: 481 FWRTRNLGYLIEAILVLEFGLTVRKYVWQYKVMLVHLYSYLGALPLAHRWYVTLEVKNIL 540
           FWRTRNLGYLIEAILVLEFGLTVRKYVWQYKVMLVHLYSYLGALPLAHRWYVTLEVKNIL
Sbjct: 481 FWRTRNLGYLIEAILVLEFGLTVRKYVWQYKVMLVHLYSYLGALPLAHRWYVTLEVKNIL 540

Query: 541 LESASHHILPQMLNSPLLQQTADLVKDYLKFMDDHLKESADLTCLAYRHRTYSKVIEFVQ 600
           LESASHHILPQMLNSPLLQQTADLVKDYLKFMDDHLKESADLTCLAYRHRTYSKVIEFVQ
Sbjct: 541 LESASHHILPQMLNSPLLQQTADLVKDYLKFMDDHLKESADLTCLAYRHRTYSKVIEFVQ 600

Query: 601 FKERLQHSMQYLSVRSDSIILSLKQKAESLDEVESILENVNHGARLVELSNEDNVKRFTF 660
           FKERLQHSMQYLSVRSDSIILSLKQKAESLDEVESILENVNHGARLVELSNEDNVKRFTF
Sbjct: 601 FKERLQHSMQYLSVRSDSIILSLKQKAESLDEVESILENVNHGARLVELSNEDNVKRFTF 660

Query: 661 NEDLQARPWWTPTTSVNFLSEPFDEGSTPACFRAKACEHKSTEKDDSKIKYAERKALLPR 720
           NEDLQARPWWTPTTSVNFLSEPFDEGSTPACFRAKACEHKSTEKDDSKIKYAERKALLPR
Sbjct: 661 NEDLQARPWWTPTTSVNFLSEPFDEGSTPACFRAKACEHKSTEKDDSKIKYAERKALLPR 720

Query: 721 LVYLSMHGCASSLRETQLNGSGLDTDATEMKPLLLKYARSIGYSIDDALSVILGMSSGKK 780
           LVYLSMHGCASSLRETQLNGSGLDTDATEMKPLLLKYARSIGYSIDDALSVILGMSSGKK
Sbjct: 721 LVYLSMHGCASSLRETQLNGSGLDTDATEMKPLLLKYARSIGYSIDDALSVILGMSSGKK 780

Query: 781 SVKDFTPDIVSWMSFAVFINAWNLWSNESVVPRADESSPSSWQIVDSLVKICVEEQLIDA 840
           SVKDFTPDIVSWMSFAVFINAWNLWSNESVVPRADESSPSSWQIVDSLVKICVEEQLIDA
Sbjct: 781 SVKDFTPDIVSWMSFAVFINAWNLWSNESVVPRADESSPSSWQIVDSLVKICVEEQLIDA 840

Query: 841 NRILTSPGNNIPVLVQMITEPISWHLVVIQSCVRSMAPQXXXXXXXXPSERPNVPRLQAI 900
           NRILTSPGNNIPVLVQMITEPISWHLVVIQSCVRSMAPQ        PSERPNVPRLQAI
Sbjct: 841 NRILTSPGNNIPVLVQMITEPISWHLVVIQSCVRSMAPQGKKKKKGGPSERPNVPRLQAI 900

Query: 901 QRSVQCMIDTLRSVQSWLSDQMRPEEQALDILLSYLQGGNEDGPGQISCILEENSARHNP 960
           QRSVQCMIDTLRSVQSWLSDQMRPEEQALDILLSYLQGGNEDGPGQISCILEENSARHNP
Sbjct: 901 QRSVQCMIDTLRSVQSWLSDQMRPEEQALDILLSYLQGGNEDGPGQISCILEENSARHNP 960

Query: 961 ELGERIAQSLETWSSAGVVRRIVGAEKELLVELKKICD 998
           ELGERIAQSLETWSSAGVVRRIVGAEKELLVELKKICD
Sbjct: 961 ELGERIAQSLETWSSAGVVRRIVGAEKELLVELKKICD 998



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,438,725
Number of extensions: 1241742
Number of successful extensions: 3210
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3208
Number of HSP's successfully gapped: 1
Length of query: 1016
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 905
Effective length of database: 11,240,047
Effective search space: 10172242535
Effective search space used: 10172242535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)