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Os05g0316000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.17 (0.0155) R2 : 0.336
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.616 (0.0406) R2dC : 0.337 R2C : 0.336
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00481 (0.0327) R2dN8 : 4.07e-05 R2N8 : -0.000698
σ : 0.293
deviance : 39.31
__
_____
C
peak time of C : 5.16
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.37 0.263 9.2 -0.219 0.626 1.55 1.29 0.766 0.00866 18.5 0.17 731 -- --
30.85 0.259 9.19 -0.18 0.568 1.58 0.635 -- 0.0234 20.1 0.0001677 826 -- --
31.79 0.263 9.21 -0.219 0.419 1.41 -- -0.547 -0.00275 19.9 0.2083 790 -- --
31.94 0.263 9.19 -0.206 0.554 1.53 -- -- 0.0276 20.3 0.1904 832 -- --
38.1 0.287 9.21 -0.12 -- 1.41 -- -0.589 -0.00645 -- 0.17 2152 -- --
35.33 0.279 9.18 -0.366 0.626 -- -0.427 -- -0.0379 5.2 -- -- -- --
35.78 0.28 9.18 -0.366 0.623 -- -- -- -0.0359 5.14 -- -- -- --
34.23 0.272 9.21 -0.192 -- 1.01 -- -- 0.00385 -- 0.1709 2071 -- --
32.91 0.267 9.19 -- 0.648 1.69 -- -- 0.052 20.1 0.17 841 -- --
56.1 0.35 9.19 -0.344 -- -- -- -- -0.0202 -- -- -- -- --
39.31 0.293 9.17 -- 0.616 -- -- -- 0.00481 5.16 -- -- -- --
35.17 0.276 9.2 -- -- 1.03 -- -- -0.00864 -- 0.14 2064 -- --
59.21 0.359 9.18 -- -- -- -- -- 0.018 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.84 temperature 20 10 > th dose independent rect. 20 9
2 31.04 humidity 50 720 > th dose dependent rect. 17 4
3 31.14 temperature 10 10 > th dose dependent rect. 5 15
6 31.27 humidity 70 720 > th dose independent rect. 17 10
9 31.37 humidity 70 720 > th dose independent rect. 15 14
12 31.39 humidity 70 720 > th dose independent rect. 17 4
18 31.43 humidity 50 720 > th dose dependent rect. 17 2
21 31.46 radiation 1 720 < th dose dependent rect. 24 17
22 31.48 radiation 1 720 < th dose dependent rect. 24 19
39 31.57 temperature 10 10 > th dose dependent rect. 20 9
48 31.62 radiation 10 1440 > th dose independent rect. 14 2
49 31.63 humidity 70 720 > th dose independent rect. 17 2
50 31.64 radiation 10 1440 > th dose independent rect. 13 17
51 31.64 radiation 10 1440 > th dose independent rect. 11 19
52 31.64 radiation 10 720 < th dose dependent rect. 14 13
54 31.65 radiation 10 1440 > th dose independent rect. 13 5
56 31.65 radiation 10 1440 > th dose independent rect. 11 7
81 31.67 radiation 40 14400 > th dose dependent rect. 15 18
82 31.68 humidity 80 720 < th dose dependent rect. 18 7
85 31.68 radiation 1 720 < th dose dependent rect. 20 23
87 31.69 humidity 80 720 < th dose dependent rect. 18 1
89 31.70 temperature 20 720 > th dose independent rect. 4 3
97 31.71 humidity 80 720 < th dose dependent rect. 18 3
100 31.72 humidity 70 14400 < th dose independent rect. 8 1
101 31.72 temperature 20 720 > th dose dependent rect. 5 2
107 31.73 radiation 10 1440 > th dose independent sin 16 NA
109 31.73 temperature 20 720 > th dose dependent rect. 4 4
110 31.73 radiation 10 1440 < th dose dependent rect. 13 5
115 31.74 radiation 40 14400 > th dose dependent rect. 8 1
116 31.74 radiation 10 1440 < th dose dependent rect. 13 10
130 31.76 humidity 70 720 > th dose independent sin 14 NA
152 31.76 radiation 1 720 < th dose dependent rect. 24 23
154 31.77 humidity 70 14400 < th dose independent rect. 20 13
206 31.82 humidity 80 720 > th dose independent rect. 12 10
207 31.82 radiation 30 14400 < th dose independent rect. 16 12
212 31.83 wind 9 14400 > th dose independent rect. 16 1
219 31.83 humidity 70 14400 > th dose independent rect. 20 13
229 31.83 radiation 10 1440 < th dose dependent rect. 11 7
232 31.83 radiation 10 1440 < th dose dependent rect. 11 12
234 31.83 radiation 10 1440 < th dose dependent rect. 11 15
251 31.85 humidity 70 14400 > th dose independent rect. 7 2
254 31.85 temperature 10 720 > th dose dependent rect. 3 6
262 31.86 radiation 30 14400 < th dose independent rect. 16 7
271 31.86 humidity 80 720 < th dose dependent sin 13 NA
279 31.87 temperature 20 720 < th dose independent rect. 4 3
290 31.87 radiation 1 720 < th dose dependent rect. 8 23
291 31.88 humidity 70 720 < th dose independent sin 13 NA
303 31.88 radiation 10 1440 < th dose dependent sin 17 NA
319 31.90 radiation 30 14400 < th dose independent rect. 16 1
330 31.91 radiation 30 14400 < th dose independent rect. 16 5
334 31.91 humidity 70 14400 > th dose independent rect. 24 9
355 31.92 radiation 1 720 < th dose dependent rect. 5 14
369 31.94 radiation 1 720 < th dose independent rect. 24 19
377 31.94 radiation 1 720 < th dose dependent rect. 18 23
381 31.95 humidity 70 720 < th dose independent rect. 14 6
413 31.97 radiation 1 720 < th dose dependent rect. 5 16
424 31.98 radiation 1 720 < th dose dependent rect. 5 22
425 31.98 radiation 1 720 < th dose dependent rect. 14 22
438 32.00 humidity 50 720 > th dose dependent rect. 15 14
439 32.00 radiation 1 720 < th dose dependent rect. 14 20
447 32.01 humidity 50 720 > th dose dependent rect. 17 10
448 32.01 radiation 30 14400 < th dose dependent rect. 19 10
455 32.02 radiation 30 14400 < th dose dependent rect. 21 8
465 32.03 radiation 1 720 < th dose dependent no NA NA
498 32.05 atmosphere 1015 4320 > th dose dependent rect. 2 5
499 32.05 temperature 25 720 < th dose dependent rect. 2 6
523 32.07 humidity 70 14400 < th dose dependent rect. 8 1
535 32.07 humidity 90 720 < th dose dependent rect. 14 9
546 32.08 humidity 80 720 < th dose independent rect. 12 9
567 32.08 humidity 50 720 > th dose dependent rect. 15 12
578 32.09 radiation 1 720 < th dose dependent sin 12 NA
579 32.09 atmosphere 1010 4320 > th dose dependent rect. 4 1
628 32.11 temperature 20 90 > th dose independent rect. 4 15
675 32.12 humidity 90 720 < th dose dependent rect. 12 11
720 32.15 atmosphere 1015 4320 > th dose independent rect. 2 7
721 32.15 radiation 1 4320 < th dose independent rect. 20 9
755 32.16 atmosphere 1015 4320 < th dose independent rect. 2 6
759 32.16 radiation 1 1440 < th dose independent rect. 14 9
770 32.16 radiation 1 720 > th dose independent rect. 8 23
772 32.16 temperature 25 720 < th dose dependent rect. 5 2
775 32.16 humidity 80 14400 < th dose dependent rect. 5 4
798 32.16 humidity 70 14400 < th dose dependent rect. 20 13
806 32.17 radiation 1 1440 < th dose independent rect. 14 5
847 32.17 humidity 80 720 < th dose dependent rect. 14 19
907 32.19 radiation 1 1440 < th dose independent sin 17 NA
918 32.19 radiation 1 1440 < th dose independent rect. 11 16
924 32.19 radiation 1 720 < th dose independent rect. 24 21
955 32.20 temperature 25 1440 > th dose independent rect. 16 1
956 32.20 temperature 25 1440 < th dose independent rect. 16 1
957 32.20 humidity 80 1440 < th dose independent rect. 12 4
964 32.20 radiation 1 1440 < th dose independent rect. 11 8