BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0316000 Os05g0316000|AK120330
         (463 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0316000  Zinc finger, RING-type domain containing protein    597   e-171
Os01g0168400  Zinc finger, RING-type domain containing protein    518   e-147

>Os05g0316000 Zinc finger, RING-type domain containing protein
          Length = 463

 Score =  597 bits (1538), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/463 (67%), Positives = 312/463 (67%)

Query: 1   MEPPAGGSSDHRRXXXXXXXXXXXXSPSGLRRYGFRFXXXXXXXXXXXXXXEYXXXXXXX 60
           MEPPAGGSSDHRR            SPSGLRRYGFRF              EY       
Sbjct: 1   MEPPAGGSSDHRRGAGTGAGAGGAASPSGLRRYGFRFSASSLLQAPLAALLEYSGVVPSG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSIRIQXXXXXXXXXXXXXXXX 120
                                                 VSIRIQ                
Sbjct: 61  PGAPQAGPPSALSSSPSSSSSSSEADGLLSAAAAGDGEVSIRIQGGPGEADAAGVAGAAS 120

Query: 121 XXXXSIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQRYDVHHVARW 180
               SIE                                         YQRYDVHHVARW
Sbjct: 121 SGEDSIEATAAGDVDPASAAAGRGGGADAEASGGGADGASGNGGGDRAYQRYDVHHVARW 180

Query: 181 IEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNDILRKQTALKGERKIAVLVGITV 240
           IEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNDILRKQTALKGERKIAVLVGITV
Sbjct: 181 IEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNDILRKQTALKGERKIAVLVGITV 240

Query: 241 IFMIHVFGVYWWYRNDDLLRPLFMLPPKEIPPFWHAIFIIMVNDTMVRQAAMAIKCMLLM 300
           IFMIHVFGVYWWYRNDDLLRPLFMLPPKEIPPFWHAIFIIMVNDTMVRQAAMAIKCMLLM
Sbjct: 241 IFMIHVFGVYWWYRNDDLLRPLFMLPPKEIPPFWHAIFIIMVNDTMVRQAAMAIKCMLLM 300

Query: 301 YYKNSRGRNYRKQGQMXXXXXXXXXXXXXXXXXXXWYRFFLNKEYGSLFSSLTTGLYLTF 360
           YYKNSRGRNYRKQGQM                   WYRFFLNKEYGSLFSSLTTGLYLTF
Sbjct: 301 YYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTF 360

Query: 361 KLTSVVEKVQSFLAAVKALSRKDVHYGSYATAEQVIAAGDMCAICQEKMHVPVLLRCKHI 420
           KLTSVVEKVQSFLAAVKALSRKDVHYGSYATAEQVIAAGDMCAICQEKMHVPVLLRCKHI
Sbjct: 361 KLTSVVEKVQSFLAAVKALSRKDVHYGSYATAEQVIAAGDMCAICQEKMHVPVLLRCKHI 420

Query: 421 FCEDCVSEWFERERTCPLCRALVKPADIRSFGDGSTSLFFQLF 463
           FCEDCVSEWFERERTCPLCRALVKPADIRSFGDGSTSLFFQLF
Sbjct: 421 FCEDCVSEWFERERTCPLCRALVKPADIRSFGDGSTSLFFQLF 463



>Os01g0168400 Zinc finger, RING-type domain containing protein
          Length = 427

 Score =  518 bits (1333), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 242/295 (82%), Positives = 261/295 (88%)

Query: 169 YQRYDVHHVARWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNDILRKQTALKG 228
           YQRYD+  VARW+EQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNDILRKQTALKG
Sbjct: 133 YQRYDIQQVARWVEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNDILRKQTALKG 192

Query: 229 ERKIAVLVGITVIFMIHVFGVYWWYRNDDLLRPLFMLPPKEIPPFWHAIFIIMVNDTMVR 288
           ERK++VLVGIT++F++HVFGVYW Y+N DL+RPL  L PKEIPPFWHAIFII+VNDTMVR
Sbjct: 193 ERKMSVLVGITILFVVHVFGVYWCYKNGDLVRPLVALAPKEIPPFWHAIFIILVNDTMVR 252

Query: 289 QAAMAIKCMLLMYYKNSRGRNYRKQGQMXXXXXXXXXXXXXXXXXXXWYRFFLNKEYGSL 348
           Q AM IKCMLLMYYKNS+GR+YR+QGQM                   WYRFFLNKEYGSL
Sbjct: 253 QTAMIIKCMLLMYYKNSKGRSYRRQGQMLTVVEYFLLLYRALLPAPVWYRFFLNKEYGSL 312

Query: 349 FSSLTTGLYLTFKLTSVVEKVQSFLAAVKALSRKDVHYGSYATAEQVIAAGDMCAICQEK 408
           FSSLTTGLYLTFKLTSVVEKVQSFL A++ALS KD HYGSYAT+EQV A GDMCAICQEK
Sbjct: 313 FSSLTTGLYLTFKLTSVVEKVQSFLTALRALSHKDFHYGSYATSEQVSATGDMCAICQEK 372

Query: 409 MHVPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPADIRSFGDGSTSLFFQLF 463
           MH P+LLRCKHIFCEDCVSEWFERERTCPLCRALVKPAD+RSFGDGSTSLFFQLF
Sbjct: 373 MHTPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 427



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.142    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,268,247
Number of extensions: 337006
Number of successful extensions: 1361
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1363
Number of HSP's successfully gapped: 2
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 158 (65.5 bits)