BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0316000 Os05g0316000|AK120330
(463 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G01960.1 | chr5:370811-372775 FORWARD LENGTH=427 504 e-143
AT3G16090.1 | chr3:5456513-5458694 FORWARD LENGTH=493 63 3e-10
AT1G65040.2 | chr1:24160105-24163365 REVERSE LENGTH=461 62 5e-10
AT1G18780.1 | chr1:6476258-6477235 REVERSE LENGTH=326 56 4e-08
AT2G29840.1 | chr2:12732387-12733983 REVERSE LENGTH=294 55 7e-08
AT2G42350.1 | chr2:17639245-17639898 FORWARD LENGTH=218 51 1e-06
AT1G18770.1 | chr1:6473370-6474048 REVERSE LENGTH=107 51 2e-06
AT5G05810.1 | chr5:1746938-1747999 FORWARD LENGTH=354 50 2e-06
AT2G20030.1 | chr2:8647813-8648985 FORWARD LENGTH=391 50 3e-06
AT3G62690.1 | chr3:23185829-23186602 REVERSE LENGTH=258 49 6e-06
>AT5G01960.1 | chr5:370811-372775 FORWARD LENGTH=427
Length = 426
Score = 504 bits (1298), Expect = e-143, Method: Compositional matrix adjust.
Identities = 234/295 (79%), Positives = 253/295 (85%)
Query: 169 YQRYDVHHVARWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNDILRKQTALKG 228
YQRYD+ ARWIEQILPFSLLLLVVFIRQHLQGFFV IWIAAVMFKSNDIL+KQTALKG
Sbjct: 132 YQRYDIQQAARWIEQILPFSLLLLVVFIRQHLQGFFVAIWIAAVMFKSNDILKKQTALKG 191
Query: 229 ERKIAVLVGITVIFMIHVFGVYWWYRNDDLLRPLFMLPPKEIPPFWHAIFIIMVNDTMVR 288
ER I+ L+GI+V F HV GVYWW+R DDLL PL MLPPK IPPFWHAIFII+VNDT+VR
Sbjct: 192 ERHISALIGISVAFTAHVVGVYWWFRKDDLLYPLIMLPPKSIPPFWHAIFIIVVNDTLVR 251
Query: 289 QAAMAIKCMLLMYYKNSRGRNYRKQGQMXXXXXXXXXXXXXXXXXXXWYRFFLNKEYGSL 348
QA+M KC LLMYYKNSRGRNYRKQGQ+ WYRFFLNK+YGSL
Sbjct: 252 QASMIFKCFLLMYYKNSRGRNYRKQGQLLTLVEYFMLLYRSLLPTPVWYRFFLNKDYGSL 311
Query: 349 FSSLTTGLYLTFKLTSVVEKVQSFLAAVKALSRKDVHYGSYATAEQVIAAGDMCAICQEK 408
FSSL TGLYLTFKLTSVVEKVQSF A+KALSRK+VHYGSYAT EQV AAGD+CAICQEK
Sbjct: 312 FSSLMTGLYLTFKLTSVVEKVQSFFTALKALSRKEVHYGSYATTEQVNAAGDLCAICQEK 371
Query: 409 MHVPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPADIRSFGDGSTSLFFQLF 463
MH P+LLRCKH+FCEDCVSEWFERERTCPLCRALVKPAD++SFGDGSTSLFFQ+F
Sbjct: 372 MHTPILLRCKHMFCEDCVSEWFERERTCPLCRALVKPADLKSFGDGSTSLFFQIF 426
>AT3G16090.1 | chr3:5456513-5458694 FORWARD LENGTH=493
Length = 492
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 356 LYLTFKLTSVVEKVQSFLAAVKALSRKDVHYGSYATAEQVIAAGDMCAICQEKMHVPVLL 415
LY TF+ + +V +L K S + + AT E++ A+ C IC+E+M L
Sbjct: 249 LYETFRNFQI--RVSDYLRYRKITSNMNDRFPD-ATPEELTASDATCIICREEMTNAKKL 305
Query: 416 RCKHIFCEDCVSEWFERERTCPLCRALVKPAD 447
C H+F C+ W ER++TCP CRALV P +
Sbjct: 306 ICGHLFHVHCLRSWLERQQTCPTCRALVVPPE 337
>AT1G65040.2 | chr1:24160105-24163365 REVERSE LENGTH=461
Length = 460
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 390 ATAEQVIAAGDMCAICQEKMHVPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPAD 447
AT E++ + C IC+E+M L C H+F C+ W ER+ TCP CRALV PA+
Sbjct: 280 ATPEELSSNDATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAE 337
>AT1G18780.1 | chr1:6476258-6477235 REVERSE LENGTH=326
Length = 325
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 358 LTFKLTSVVEKVQSFLAAVKALSRKDVHYGSYATAEQVIAAGDMCAICQEKMHVP---VL 414
++F T+ V + V AL+RK +Y A V+ D+C IC E+ V
Sbjct: 238 VSFNETNTVRLKPASKLTVGALNRK-----TYKKASGVVCENDVCTICLEEFDDGRSIVT 292
Query: 415 LRCKHIFCEDCVSEWFERERTCPLCR 440
L C H F E+CV EWF R CPLCR
Sbjct: 293 LPCGHEFDEECVLEWFVRSHVCPLCR 318
>AT2G29840.1 | chr2:12732387-12733983 REVERSE LENGTH=294
Length = 293
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 356 LYLTFKLTSVVEKVQSFLAAVKALSRKDVHYGSYATAEQVIAAGDMCAICQEKMHVP--- 412
L +F T+ + AV++L+RK +Y A V+ +MC+IC E+
Sbjct: 203 LQASFNETNTARLKPASKLAVESLNRK-----TYKKASDVVGENEMCSICLEEFDDGRSI 257
Query: 413 VLLRCKHIFCEDCVSEWFERERTCPLCR 440
V L C H F ++C +WFE CPLCR
Sbjct: 258 VALPCGHEFDDECALKWFETNHDCPLCR 285
>AT2G42350.1 | chr2:17639245-17639898 FORWARD LENGTH=218
Length = 217
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 398 AGDMCAIC----QEKMHVPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPADIR 449
AG CA+C +EK + +L CKH+F CV W + TCP+CR +P+ R
Sbjct: 96 AGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPSHPR 151
>AT1G18770.1 | chr1:6473370-6474048 REVERSE LENGTH=107
Length = 106
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 376 VKALSRKDVHYGSYATAEQVIAAGDMCAICQEKM---HVPVLLRCKHIFCEDCVSEWFER 432
VK+L+RK + +T G+MC IC E+ V L C H F ++CV +WFE
Sbjct: 40 VKSLARKIYKMTTSST-------GEMCIICLEEFSEGRRVVTLPCGHDFDDECVLKWFET 92
Query: 433 ERTCPLCR 440
+CPLCR
Sbjct: 93 NHSCPLCR 100
>AT5G05810.1 | chr5:1746938-1747999 FORWARD LENGTH=354
Length = 353
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 399 GDMCAICQEKMHVPVLLR----CKHIFCEDCVSEWFERERTCPLCRALVKPADIRSFGDG 454
G CA+C + +LR CKH F +CV W + TCPLCR V P DI GD
Sbjct: 89 GLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLIGDC 148
Query: 455 STSLFFQL 462
++ +F+L
Sbjct: 149 NS--WFEL 154
>AT2G20030.1 | chr2:8647813-8648985 FORWARD LENGTH=391
Length = 390
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 391 TAEQVIAAGDMCAICQEKMHVPVLLR----CKHIFCEDCVSEWFERERTCPLCRALVK-P 445
+A + + G C++C K +LR C+H F C+ +W E+ TCPLCR V
Sbjct: 113 SALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIE 172
Query: 446 ADIRSFGDGSTSL 458
D+ G+ STSL
Sbjct: 173 DDLSVLGNSSTSL 185
>AT3G62690.1 | chr3:23185829-23186602 REVERSE LENGTH=258
Length = 257
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 400 DMCAIC----QEKMHVPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPA 446
+ C++C +E VL +C H+F DC+ WF +CPLCRA V+PA
Sbjct: 111 EECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPA 161
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.142 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,526,992
Number of extensions: 221874
Number of successful extensions: 1070
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1127
Number of HSP's successfully gapped: 14
Length of query: 463
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,310,137
Effective search space: 2999959457
Effective search space used: 2999959457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 113 (48.1 bits)