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Os05g0301700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrome c1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0107) R2 : 0.00803
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0434 (0.0226) R2dN8 : 0.0104 R2N8 : 0.00803
σ : 0.202
deviance : 18.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.27 0.177 12 -0.0739 0.146 0.286 -0.34 -0.947 0.065 3.8 93.77 505 -- --
14.83 0.179 12 -0.109 0.16 0.532 -0.367 -- 0.0325 4.78 95.27 353 -- --
14.39 0.177 12 -0.0775 0.147 0.301 -- -1.34 0.0484 4.69 94.49 374 -- --
15.17 0.181 12 -0.105 0.159 0.529 -- -- 0.0424 4.46 95.16 358 -- --
15.37 0.183 12 -0.0758 -- 0.442 -- -1.46 0.0684 -- 94.58 346 -- --
16.29 0.189 12 -0.12 0.182 -- -0.417 -- 0.0244 5.14 -- -- -- --
16.73 0.192 12 -0.119 0.18 -- -- -- 0.0263 5.07 -- -- -- --
16.43 0.189 12 -0.101 -- 0.551 -- -- 0.0472 -- 94.85 358 -- --
15.44 0.183 12 -- 0.162 0.549 -- -- 0.0531 4.48 95.58 346 -- --
18.42 0.201 12 -0.113 -- -- -- -- 0.0309 -- -- -- -- --
17.1 0.193 12 -- 0.177 -- -- -- 0.0396 5.09 -- -- -- --
16.69 0.19 12 -- -- 0.61 -- -- 0.0662 -- 94.89 356 -- --
18.76 0.202 12 -- -- -- -- -- 0.0434 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.63 radiation 1.0 1440 < th dose independent rect. 11 1
2 13.63 radiation 1.0 1440 < th dose dependent rect. 11 1
3 14.52 wind 1.0 43200 > th dose independent rect. 6 2
4 14.57 wind 1.0 43200 < th dose dependent rect. 6 3
5 14.58 wind 1.0 43200 < th dose independent rect. 6 1
8 14.60 precipitation 0.1 720 > th dose independent rect. 2 2
9 14.60 precipitation 0.1 720 > th dose dependent rect. 2 2
12 14.62 radiation 1.0 1440 < th dose dependent rect. 8 8
13 14.63 radiation 40.0 10 < th dose independent rect. 23 21
15 14.65 wind 1.0 43200 > th dose independent rect. 4 7
16 14.65 radiation 1.0 1440 < th dose independent rect. 8 7
17 14.65 humidity 90.0 4320 > th dose dependent rect. 2 1
18 14.65 radiation 1.0 1440 < th dose dependent rect. 13 3
21 14.65 humidity 90.0 720 > th dose dependent rect. 20 6
24 14.66 radiation 1.0 1440 < th dose independent rect. 14 1
27 14.66 radiation 1.0 1440 < th dose dependent rect. 14 1
31 14.67 atmosphere 1005.0 720 > th dose independent rect. 23 1
34 14.68 atmosphere 1005.0 720 > th dose independent rect. 21 3
42 14.71 radiation 1.0 1440 > th dose independent rect. 13 2
45 14.72 radiation 1.0 1440 > th dose independent rect. 8 7
49 14.73 wind 1.0 43200 < th dose independent rect. 4 7
59 14.75 wind 1.0 43200 < th dose independent rect. 6 4
85 14.79 humidity 90.0 720 > th dose dependent rect. 20 1
98 14.80 wind 1.0 43200 < th dose independent rect. 2 17
106 14.81 temperature 20.0 10 > th dose independent rect. 20 8
108 14.81 humidity 80.0 4320 > th dose dependent rect. 8 1
136 14.85 humidity 90.0 720 > th dose dependent rect. 20 16
146 14.87 wind 1.0 43200 > th dose independent rect. 13 19
157 14.88 wind 1.0 43200 < th dose independent rect. 2 12
158 14.88 wind 1.0 43200 < th dose independent rect. 12 20
159 14.88 humidity 90.0 720 > th dose dependent sin 13 NA
161 14.88 humidity 80.0 4320 > th dose dependent rect. 5 5
169 14.89 humidity 60.0 14400 > th dose independent rect. 4 4
183 14.89 wind 1.0 43200 < th dose dependent rect. 4 15
186 14.90 humidity 60.0 14400 > th dose independent rect. 7 1
190 14.90 wind 1.0 43200 > th dose independent rect. 15 17
200 14.91 atmosphere 1005.0 270 > th dose independent rect. 22 10
202 14.91 radiation 20.0 90 < th dose independent rect. 3 16
206 14.91 precipitation 0.1 14400 > th dose dependent rect. 3 2
216 14.92 wind 1.0 43200 < th dose independent rect. 4 4
218 14.92 wind 1.0 43200 > th dose independent rect. 15 19
228 14.93 precipitation 0.1 14400 > th dose independent rect. 3 2
230 14.93 radiation 40.0 10 < th dose independent rect. 4 16
234 14.93 radiation 20.0 90 < th dose independent rect. 23 20
243 14.94 humidity 80.0 4320 > th dose independent rect. 9 1
244 14.94 precipitation 0.1 14400 < th dose independent rect. 3 2
249 14.94 precipitation 0.1 14400 < th dose dependent rect. 3 2
253 14.94 wind 1.0 43200 < th dose dependent rect. 4 9
255 14.94 wind 1.0 43200 < th dose dependent rect. 2 18
260 14.95 humidity 90.0 4320 < th dose independent rect. 4 5
280 14.96 wind 1.0 43200 < th dose independent sin 4 NA
288 14.96 wind 1.0 43200 < th dose dependent rect. 4 7
291 14.96 humidity 80.0 4320 > th dose dependent rect. 4 10
303 14.97 wind 1.0 43200 > th dose independent rect. 2 17
306 14.97 wind 1.0 43200 < th dose independent rect. 15 20
343 14.98 radiation 40.0 270 < th dose dependent rect. 21 21
344 14.98 humidity 90.0 720 > th dose dependent rect. 5 22
345 14.99 humidity 80.0 4320 < th dose independent rect. 9 2
349 14.99 radiation 1.0 1440 > th dose independent rect. 11 8
350 14.99 radiation 1.0 1440 < th dose independent rect. 11 8
358 14.99 wind 1.0 43200 > th dose independent rect. 2 12
378 14.99 radiation 40.0 270 < th dose dependent sin 7 NA
390 14.99 radiation 40.0 90 < th dose dependent rect. 23 20
396 15.00 humidity 60.0 14400 > th dose independent rect. 24 8
397 15.00 temperature 20.0 10 > th dose independent rect. 20 10
415 15.00 radiation 40.0 90 < th dose dependent rect. 3 16
416 15.00 humidity 90.0 720 > th dose dependent rect. 7 20
475 15.01 radiation 40.0 10 < th dose dependent rect. 6 14
479 15.01 humidity 70.0 90 > th dose dependent rect. 23 20
495 15.02 wind 1.0 43200 > th dose independent rect. 2 15
507 15.02 atmosphere 1000.0 270 > th dose dependent rect. 23 9
511 15.02 radiation 30.0 90 < th dose dependent rect. 6 13
518 15.02 humidity 90.0 720 > th dose dependent rect. 8 22
526 15.03 humidity 60.0 14400 < th dose independent rect. 6 1
528 15.03 humidity 60.0 14400 < th dose independent rect. 20 1
530 15.03 radiation 20.0 14400 > th dose independent rect. 17 1
554 15.03 humidity 90.0 4320 > th dose independent rect. 4 6
589 15.03 radiation 10.0 90 < th dose independent rect. 6 13
599 15.03 humidity 60.0 14400 < th dose dependent rect. 6 1
601 15.03 humidity 60.0 14400 < th dose dependent rect. 20 1
603 15.03 radiation 20.0 14400 > th dose dependent rect. 17 1
677 15.04 humidity 70.0 14400 < th dose independent rect. 20 14
706 15.04 atmosphere 1000.0 270 > th dose dependent rect. 1 7
723 15.05 wind 1.0 43200 > th dose independent sin 5 NA
751 15.05 wind 1.0 43200 < th dose independent rect. 15 17
758 15.05 wind 9.0 14400 > th dose dependent rect. 14 1
759 15.05 humidity 70.0 4320 > th dose dependent rect. 10 1
772 15.05 radiation 1.0 1440 < th dose dependent rect. 11 18
792 15.06 atmosphere 1005.0 270 > th dose independent rect. 1 7
814 15.06 humidity 90.0 720 > th dose dependent no NA NA
823 15.06 radiation 1.0 1440 < th dose dependent rect. 11 11
839 15.07 radiation 1.0 1440 > th dose independent sin 18 NA
840 15.07 radiation 1.0 1440 < th dose independent sin 18 NA
841 15.07 radiation 40.0 10 < th dose independent sin 6 NA
890 15.07 radiation 40.0 10 < th dose dependent rect. 23 21
898 15.08 wind 5.0 14400 > th dose independent rect. 16 1
924 15.08 radiation 40.0 10 > th dose independent rect. 13 23
926 15.08 humidity 70.0 30 > th dose dependent sin 3 NA
929 15.08 humidity 90.0 14400 < th dose dependent rect. 8 1
930 15.08 humidity 80.0 14400 < th dose dependent rect. 20 1
953 15.08 humidity 80.0 14400 < th dose dependent rect. 20 15
968 15.09 radiation 20.0 270 < th dose independent sin 8 NA
971 15.09 humidity 90.0 4320 > th dose independent rect. 6 3
978 15.09 humidity 70.0 14400 > th dose independent rect. 20 14
984 15.09 humidity 80.0 4320 > th dose dependent sin 3 NA
987 15.09 wind 5.0 1440 > th dose dependent rect. 14 2
991 15.09 temperature 15.0 90 > th dose dependent rect. 19 8