BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0301700 Os05g0301700|AK070578
         (304 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27240.1  | chr3:10056144-10058370 REVERSE LENGTH=308          447   e-126
AT5G40810.1  | chr5:16340200-16342327 FORWARD LENGTH=308          445   e-125

>AT3G27240.1 | chr3:10056144-10058370 REVERSE LENGTH=308
          Length = 307

 Score =  447 bits (1151), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/307 (75%), Positives = 244/307 (79%), Gaps = 3/307 (0%)

Query: 1   MAAGRGINQLLRRTLHNQXXXXXXXXXFRIK--HEEXXXXXXXXXXXXXXXXX-XXXFAT 57
           M  G  I Q+LRR LH+Q         F  K  HE+                     F+T
Sbjct: 1   MVGGGVIQQILRRKLHSQSLATPVLSWFSSKKAHEDAGSSGVRALALLGAGVTGLLSFST 60

Query: 58  IASADEAEHGLAAAEYPWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGV 117
           +ASADEAEHGL + EYPWPH GILSSYDHASIRRGHQVY QVCASCHSMSLISYRDLVGV
Sbjct: 61  VASADEAEHGLESPEYPWPHDGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGV 120

Query: 118 AYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLS 177
           AYTEEE KAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPY NE AARFANGGAYPPDLS
Sbjct: 121 AYTEEEAKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLS 180

Query: 178 LITKARHNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDG 237
           LITKARHNG NYVFALLTGYRDPPAG+ IREGLHYNPYFPGGAIAMPKML D AVEYEDG
Sbjct: 181 LITKARHNGPNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDEAVEYEDG 240

Query: 238 TPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRK 297
            PATEAQMGKD+VSFL+WAAEPEMEERKLMG KWIF          YYRR++WSVLKSRK
Sbjct: 241 VPATEAQMGKDIVSFLAWAAEPEMEERKLMGFKWIFLLSLALLQAAYYRRLKWSVLKSRK 300

Query: 298 LVLDVVN 304
           LVLDVVN
Sbjct: 301 LVLDVVN 307



>AT5G40810.1 | chr5:16340200-16342327 FORWARD LENGTH=308
          Length = 307

 Score =  445 bits (1144), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/307 (75%), Positives = 240/307 (78%), Gaps = 3/307 (0%)

Query: 1   MAAGRGINQLLRRTLHNQXXXXXXXXXFRIK---HEEXXXXXXXXXXXXXXXXXXXXFAT 57
           M  G  I QLLRR LH+Q            K    +                     F+T
Sbjct: 1   MVGGGVIRQLLRRKLHSQSVATPVLSWLSSKKANEDAGSAGLRAFALMGAGITGLLSFST 60

Query: 58  IASADEAEHGLAAAEYPWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGV 117
           +ASADEAEHGL    YPWPH GILSSYDHASIRRGHQVY QVCASCHSMSLISYRDLVGV
Sbjct: 61  VASADEAEHGLECPNYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGV 120

Query: 118 AYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLS 177
           AYTEEE KAMAAEIEVVDGPNDEGEMFTRPGKLSDR P+PY NE AARFANGGAYPPDLS
Sbjct: 121 AYTEEEAKAMAAEIEVVDGPNDEGEMFTRPGKLSDRLPEPYSNESAARFANGGAYPPDLS 180

Query: 178 LITKARHNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDG 237
           L+TKARHNGQNYVFALLTGYRDPPAG+ IREGLHYNPYFPGGAIAMPKML D AVEYEDG
Sbjct: 181 LVTKARHNGQNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDEAVEYEDG 240

Query: 238 TPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRK 297
           TPATEAQMGKDVVSFLSWAAEPEMEERKLMG KWIF          YYRR++WSVLKSRK
Sbjct: 241 TPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFLLSLALLQAAYYRRLKWSVLKSRK 300

Query: 298 LVLDVVN 304
           LVLDVVN
Sbjct: 301 LVLDVVN 307



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,100,039
Number of extensions: 249027
Number of successful extensions: 436
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 206
Effective length of database: 8,419,801
Effective search space: 1734479006
Effective search space used: 1734479006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)