BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0301700 Os05g0301700|AK070578
         (304 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0301700  Similar to Cytochrome c1 (Fragment)                 542   e-154
Os01g0935700  Similar to Cytochrome c1 (Fragment)                 492   e-139

>Os05g0301700 Similar to Cytochrome c1 (Fragment)
          Length = 304

 Score =  542 bits (1396), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/304 (87%), Positives = 265/304 (87%)

Query: 1   MAAGRGINQLLRRTLHNQXXXXXXXXXFRIKHEEXXXXXXXXXXXXXXXXXXXXFATIAS 60
           MAAGRGINQLLRRTLHNQ         FRIKHEE                    FATIAS
Sbjct: 1   MAAGRGINQLLRRTLHNQSSGSSLLSSFRIKHEESSAGLRALALLGVGASGLLSFATIAS 60

Query: 61  ADEAEHGLAAAEYPWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYT 120
           ADEAEHGLAAAEYPWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYT
Sbjct: 61  ADEAEHGLAAAEYPWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYT 120

Query: 121 EEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLSLIT 180
           EEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLSLIT
Sbjct: 121 EEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLSLIT 180

Query: 181 KARHNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGTPA 240
           KARHNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGTPA
Sbjct: 181 KARHNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGTPA 240

Query: 241 TEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRKLVL 300
           TEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIF          YYRRMRWSVLKSRKLVL
Sbjct: 241 TEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFLLSLALLQAAYYRRMRWSVLKSRKLVL 300

Query: 301 DVVN 304
           DVVN
Sbjct: 301 DVVN 304



>Os01g0935700 Similar to Cytochrome c1 (Fragment)
          Length = 304

 Score =  492 bits (1267), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/306 (80%), Positives = 251/306 (82%), Gaps = 4/306 (1%)

Query: 1   MAAGRGINQLLRRTLHNQXXXXXXXXXFRIKHEEXX--XXXXXXXXXXXXXXXXXXFATI 58
           MAAGRGI+QLL++                I HEE                      FATI
Sbjct: 1   MAAGRGISQLLKKAFRPSSSSPLSSSW--INHEESSGFTGLRALAILGVGASGLLSFATI 58

Query: 59  ASADEAEHGLAAAEYPWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVA 118
           ASADEAEHGL A  YPWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVA
Sbjct: 59  ASADEAEHGLEAPHYPWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVA 118

Query: 119 YTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLSL 178
           YTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPY NEQAARF+NGGAYPPDLSL
Sbjct: 119 YTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEQAARFSNGGAYPPDLSL 178

Query: 179 ITKARHNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGT 238
           ITKARHNGQNYVFALLTGYRDPPAGV IREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGT
Sbjct: 179 ITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGT 238

Query: 239 PATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRKL 298
           PATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIF          YYRRM+WSV KSRKL
Sbjct: 239 PATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFLLSLALLQAAYYRRMKWSVYKSRKL 298

Query: 299 VLDVVN 304
           VLDVVN
Sbjct: 299 VLDVVN 304



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,248,373
Number of extensions: 433349
Number of successful extensions: 777
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 775
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 204
Effective length of database: 11,814,401
Effective search space: 2410137804
Effective search space used: 2410137804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)