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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0263200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Retrotransposon gag protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0204) R2 : 8.49e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000843 (0.0428) R2dN8 : 1.1e-06 R2N8 : 8.49e-07
σ : 0.383
deviance : 67.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.77 0.369 3.31 0.201 0.219 -0.237 -0.282 -0.877 -0.00691 6.62 70.71 4450 -- --
62.73 0.369 3.31 0.181 0.229 -0.286 -0.345 -- -0.0177 6.42 70 4374 -- --
61.82 0.366 3.31 0.218 0.241 -0.199 -- -0.993 0.00504 7.06 70.23 4993 -- --
62.87 0.369 3.31 0.145 0.214 -0.303 -- -- -0.0287 7 70.41 4336 -- --
64.36 0.374 3.31 0.219 -- -0.189 -- -0.988 0.00092 -- 70.55 5798 -- --
64.14 0.375 3.3 0.151 0.218 -- -0.287 -- 0.0108 6.61 -- -- -- --
64.32 0.376 3.3 0.148 0.217 -- -- -- 0.012 6.98 -- -- -- --
65.27 0.376 3.31 0.145 -- -0.311 -- -- -0.0299 -- 70.99 4330 -- --
63.41 0.371 3.31 -- 0.215 -0.307 -- -- -0.0453 6.97 70.76 4336 -- --
66.81 0.382 3.3 0.152 -- -- -- -- 0.0161 -- -- -- -- --
64.9 0.377 3.3 -- 0.219 -- -- -- -0.00444 6.94 -- -- -- --
65.85 0.378 3.32 -- -- -0.312 -- -- -0.0433 -- 70.74 4298 -- --
67.42 0.383 3.31 -- -- -- -- -- -0.000843 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.99 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 53.40 atmosphere 1005.0 90 > th dose dependent rect. 2 1
6 54.22 temperature 25.0 90 > th dose independent rect. 1 1
7 54.22 radiation 1.0 43200 < th dose dependent rect. 3 1
8 54.28 radiation 1.0 4320 < th dose dependent rect. 3 1
9 54.28 atmosphere 1005.0 10 > th dose dependent rect. 2 2
11 54.34 temperature 25.0 90 > th dose dependent rect. 1 2
25 54.42 wind 9.0 1440 < th dose independent rect. 3 1
26 54.42 temperature 10.0 1440 > th dose independent rect. 3 1
29 54.42 temperature 30.0 1440 < th dose independent rect. 3 1
33 54.42 humidity 50.0 1440 > th dose independent rect. 3 1
42 54.42 atmosphere 995.0 1440 > th dose independent rect. 3 1
43 54.42 radiation 1.0 1440 < th dose independent rect. 3 1
63 54.42 temperature 10.0 1440 > th dose independent rect. 4 23
75 54.53 wind 3.0 30 < th dose independent rect. 2 1
82 54.55 wind 5.0 30 < th dose dependent rect. 2 1
86 54.56 atmosphere 1005.0 30 > th dose independent rect. 2 1
92 54.58 temperature 10.0 30 > th dose independent rect. 2 1
94 54.58 temperature 30.0 30 < th dose independent rect. 2 1
95 54.58 humidity 50.0 30 > th dose independent rect. 2 1
99 54.58 atmosphere 1010.0 30 < th dose independent rect. 2 1
101 54.58 radiation 1.0 30 < th dose independent rect. 2 1
106 54.58 precipitation 0.1 30 < th dose independent rect. 2 1
107 54.58 temperature 10.0 30 > th dose independent rect. 3 23
108 54.58 humidity 50.0 30 > th dose dependent rect. 2 1
111 54.58 radiation 1.0 30 < th dose dependent rect. 2 1
116 54.58 precipitation 0.1 30 < th dose dependent rect. 2 1
117 54.59 humidity 90.0 30 > th dose independent rect. 2 1
121 54.63 atmosphere 1015.0 30 < th dose dependent rect. 2 1
123 54.69 temperature 30.0 30 < th dose dependent rect. 2 1
126 54.71 wind 1.0 30 > th dose independent rect. 2 1
134 54.85 precipitation 0.1 30 < th dose independent rect. 3 23
138 54.85 precipitation 0.1 30 < th dose dependent rect. 3 23
187 55.57 wind 9.0 30 < th dose independent rect. 3 23
196 56.24 humidity 50.0 30 > th dose independent rect. 3 23
240 57.45 humidity 90.0 90 < th dose independent rect. 2 1
261 58.43 atmosphere 995.0 720 > th dose independent rect. 23 16
275 58.77 temperature 30.0 30 < th dose independent rect. 3 23
295 59.14 humidity 90.0 90 < th dose independent rect. 1 3
299 59.18 precipitation 0.1 720 < th dose independent rect. 15 8
302 59.18 precipitation 0.1 720 < th dose dependent rect. 15 8
304 59.24 temperature 10.0 720 > th dose independent rect. 15 8
305 59.24 temperature 10.0 720 > th dose independent rect. 23 16
313 59.38 atmosphere 995.0 720 > th dose independent rect. 7 8
342 59.44 temperature 10.0 720 > th dose independent rect. 3 8
343 59.44 atmosphere 995.0 720 > th dose independent rect. 3 8
344 59.44 temperature 10.0 720 > th dose independent rect. 11 16
347 59.46 atmosphere 1015.0 30 < th dose independent rect. 3 23
360 59.60 humidity 50.0 720 > th dose independent rect. 3 8
367 59.66 wind 9.0 720 < th dose independent rect. 3 8
373 59.70 precipitation 0.1 720 < th dose independent rect. 11 16
374 59.70 precipitation 0.1 720 < th dose dependent rect. 11 16
381 59.75 wind 9.0 720 < th dose independent rect. 19 8
384 59.76 radiation 10.0 30 < th dose dependent rect. 3 23
394 59.85 temperature 25.0 270 > th dose dependent rect. 24 6
402 59.93 humidity 90.0 90 < th dose independent rect. 1 7
403 59.95 wind 1.0 10 < th dose independent rect. 13 14
407 59.97 temperature 10.0 720 > th dose independent rect. 7 8
408 59.97 atmosphere 1015.0 720 < th dose independent rect. 7 8
409 59.97 temperature 10.0 720 > th dose independent rect. 15 16
413 59.99 atmosphere 995.0 30 > th dose dependent rect. 3 23
419 60.04 temperature 10.0 720 > th dose independent rect. 19 8
420 60.04 temperature 30.0 720 < th dose independent rect. 19 8
421 60.04 humidity 50.0 720 > th dose independent rect. 19 8
422 60.04 atmosphere 995.0 720 > th dose independent rect. 19 8
423 60.04 radiation 1.0 720 < th dose independent rect. 19 8
428 60.04 temperature 10.0 720 > th dose independent rect. 3 16
429 60.04 radiation 1.0 720 < th dose dependent rect. 19 8
456 60.08 wind 1.0 10 < th dose independent rect. 17 10
465 60.09 wind 1.0 10 < th dose independent rect. 21 6
468 60.09 precipitation 0.1 720 < th dose independent rect. 19 8
471 60.09 precipitation 0.1 720 < th dose dependent rect. 19 8
477 60.11 precipitation 0.1 720 < th dose independent rect. 15 16
478 60.11 precipitation 0.1 720 < th dose dependent rect. 15 16
488 60.16 wind 9.0 30 < th dose dependent rect. 3 23
489 60.17 wind 9.0 720 < th dose independent rect. 15 16
492 60.19 wind 3.0 30 < th dose dependent rect. 2 6
500 60.22 wind 9.0 720 < th dose independent rect. 15 8
509 60.25 humidity 90.0 720 < th dose independent rect. 1 3
515 60.27 atmosphere 1000.0 10 > th dose independent rect. 14 12
521 60.30 wind 1.0 10 < th dose independent rect. 6 21
527 60.34 atmosphere 995.0 720 > th dose independent rect. 15 8
532 60.35 atmosphere 1000.0 10 > th dose independent rect. 16 10
534 60.35 humidity 50.0 30 > th dose dependent rect. 3 23
548 60.41 humidity 90.0 10 > th dose independent rect. 24 3
549 60.41 radiation 40.0 720 < th dose independent rect. 15 16
550 60.41 radiation 10.0 30 < th dose independent rect. 3 23
582 60.44 atmosphere 995.0 720 > th dose independent rect. 11 16
589 60.47 radiation 40.0 720 < th dose independent rect. 15 8
597 60.51 atmosphere 1015.0 720 < th dose independent rect. 3 16
599 60.52 humidity 90.0 90 < th dose independent rect. 1 20
610 60.59 temperature 25.0 1440 < th dose independent rect. 1 1
612 60.59 humidity 60.0 10 > th dose independent rect. 14 12
615 60.60 precipitation 0.1 720 < th dose independent rect. 7 8
616 60.60 atmosphere 995.0 720 > th dose independent rect. 3 16
621 60.60 precipitation 0.1 720 < th dose dependent rect. 7 8
628 60.62 humidity 80.0 14400 < th dose dependent rect. 3 6
632 60.64 temperature 10.0 30 > th dose dependent rect. 3 23
640 60.67 atmosphere 1015.0 720 < th dose independent rect. 3 8
662 60.73 radiation 40.0 30 < th dose independent rect. 14 12
665 60.74 atmosphere 995.0 720 > th dose independent rect. 3 23
670 60.78 humidity 90.0 720 > th dose independent rect. 3 1
672 60.79 wind 1.0 10 > th dose independent rect. 21 23
684 60.83 atmosphere 1000.0 30 > th dose independent rect. 8 18
686 60.83 wind 1.0 30 > th dose dependent rect. 2 1
687 60.84 atmosphere 995.0 720 > th dose independent rect. 15 16
689 60.85 wind 1.0 30 > th dose independent rect. 3 23
691 60.86 radiation 40.0 10 < th dose dependent rect. 14 12
694 60.87 precipitation 0.1 720 < th dose independent rect. 3 8
696 60.87 precipitation 0.1 720 < th dose dependent rect. 3 8
701 60.89 wind 9.0 720 < th dose dependent rect. 2 1
708 60.91 atmosphere 995.0 720 > th dose independent rect. 14 1
714 60.94 atmosphere 1000.0 10 > th dose independent rect. 21 23
715 60.94 radiation 30.0 10 < th dose dependent rect. 16 10
717 60.95 wind 1.0 14400 < th dose dependent rect. 6 1
772 61.00 radiation 30.0 10 < th dose independent rect. 16 10
777 61.00 temperature 25.0 720 > th dose dependent rect. 3 6
780 61.01 radiation 10.0 10 < th dose independent rect. 16 10
784 61.02 humidity 80.0 4320 > th dose independent rect. 7 4
785 61.02 wind 1.0 30 < th dose independent rect. 2 10
787 61.02 precipitation 0.1 10 < th dose independent rect. 2 14
788 61.02 atmosphere 995.0 720 > th dose independent rect. 15 23
790 61.02 humidity 90.0 90 < th dose dependent rect. 2 1
793 61.02 humidity 80.0 14400 < th dose dependent rect. 21 13
794 61.02 precipitation 0.1 10 < th dose dependent rect. 2 14
796 61.03 wind 9.0 10 < th dose independent rect. 16 10
801 61.04 humidity 70.0 14400 > th dose independent rect. 8 1
804 61.04 wind 1.0 14400 < th dose independent rect. 4 4
805 61.04 precipitation 0.1 720 < th dose independent rect. 23 16
808 61.04 wind 1.0 14400 < th dose dependent rect. 4 4
810 61.04 precipitation 0.1 720 < th dose dependent rect. 23 16
812 61.05 temperature 10.0 10 > th dose independent rect. 16 10
813 61.05 humidity 50.0 10 > th dose independent rect. 16 10
815 61.05 atmosphere 1000.0 10 > th dose independent rect. 2 12
816 61.05 temperature 10.0 10 > th dose independent rect. 2 14
818 61.05 atmosphere 1015.0 10 < th dose independent rect. 2 14
832 61.07 atmosphere 1000.0 10 > th dose independent rect. 2 14
839 61.08 radiation 10.0 10 < th dose independent rect. 14 12
857 61.10 wind 1.0 14400 < th dose dependent rect. 2 6
861 61.11 wind 5.0 720 < th dose independent rect. 2 1
862 61.11 humidity 80.0 4320 < th dose independent rect. 7 4
865 61.11 precipitation 0.1 10 < th dose independent rect. 16 10
870 61.11 precipitation 0.1 10 < th dose dependent rect. 16 10
910 61.14 wind 1.0 14400 > th dose independent rect. 4 4
914 61.15 wind 1.0 14400 > th dose independent rect. 1 2
918 61.15 temperature 10.0 1440 > th dose independent rect. 17 10
923 61.15 radiation 30.0 1440 < th dose independent rect. 17 10
930 61.15 temperature 10.0 1440 > th dose independent rect. 3 14
934 61.15 humidity 80.0 720 > th dose dependent rect. 3 1
943 61.16 wind 9.0 10 < th dose independent rect. 14 12
945 61.16 precipitation 0.1 10 < th dose independent rect. 2 12
951 61.16 precipitation 0.1 10 < th dose dependent rect. 2 12
954 61.17 temperature 10.0 10 > th dose independent rect. 2 12
956 61.17 temperature 10.0 10 > th dose independent rect. 14 12
958 61.17 atmosphere 1015.0 10 < th dose independent rect. 2 12
959 61.17 radiation 40.0 10 < th dose independent rect. 3 23
971 61.19 humidity 70.0 4320 > th dose independent rect. 10 1
972 61.19 humidity 70.0 14400 < th dose independent rect. 8 1
988 61.20 wind 9.0 10 < th dose independent rect. 2 14
999 61.21 wind 1.0 10 > th dose independent rect. 8 23