BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0263200 Os05g0263200|Os05g0263200
         (284 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0492150                                                      358   3e-99
Os05g0263200  Retrotransposon gag protein family protein          358   3e-99
Os11g0413500                                                       71   1e-12

>Os09g0492150 
          Length = 284

 Score =  358 bits (918), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 190/284 (66%), Positives = 190/284 (66%)

Query: 1   MGSNVEIEDCVTMAQFNEMKQSMEALTANVQALMNRLPEPPPEDANXXXXXXXXXXXXXX 60
           MGSNVEIEDCVTMAQFNEMKQSMEALTANVQALMNRLPEPPPEDAN              
Sbjct: 1   MGSNVEIEDCVTMAQFNEMKQSMEALTANVQALMNRLPEPPPEDANASHHGEEDEESEGE 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHGLEESGTDEENLKQGSLS 120
                                                   EHGLEESGTDEENLKQGSLS
Sbjct: 61  AAARLAREQRRRRRDRVVANARRPPHPGRGNGGRGADRGREHGLEESGTDEENLKQGSLS 120

Query: 121 VDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIVEFQQYRNLIELVHQASKAER 180
           VDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIVEFQQYRNLIELVHQASKAER
Sbjct: 121 VDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIVEFQQYRNLIELVHQASKAER 180

Query: 181 QLQQDMKSNRGVSFSTKNAASGSKFTXXXXXXXXXXXXXXXXXXXXXYGTSSGKDLAAPN 240
           QLQQDMKSNRGVSFSTKNAASGSKFT                     YGTSSGKDLAAPN
Sbjct: 181 QLQQDMKSNRGVSFSTKNAASGSKFTSRGSGNRGAFSSSSGGARSSNYGTSSGKDLAAPN 240

Query: 241 ERKNAANTSSTSWVLPPRXXXXXXXXXXXXXXXXXXXQTIEPSL 284
           ERKNAANTSSTSWVLPPR                   QTIEPSL
Sbjct: 241 ERKNAANTSSTSWVLPPRVVEFNASNVVVVVMLLESVQTIEPSL 284



>Os05g0263200 Retrotransposon gag protein family protein
          Length = 284

 Score =  358 bits (918), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 190/284 (66%), Positives = 190/284 (66%)

Query: 1   MGSNVEIEDCVTMAQFNEMKQSMEALTANVQALMNRLPEPPPEDANXXXXXXXXXXXXXX 60
           MGSNVEIEDCVTMAQFNEMKQSMEALTANVQALMNRLPEPPPEDAN              
Sbjct: 1   MGSNVEIEDCVTMAQFNEMKQSMEALTANVQALMNRLPEPPPEDANASHHGEEDEESEGE 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHGLEESGTDEENLKQGSLS 120
                                                   EHGLEESGTDEENLKQGSLS
Sbjct: 61  AAARLAREQRRRRRDRVVANARRPPHPGRGNGGRGADRGREHGLEESGTDEENLKQGSLS 120

Query: 121 VDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIVEFQQYRNLIELVHQASKAER 180
           VDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIVEFQQYRNLIELVHQASKAER
Sbjct: 121 VDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIVEFQQYRNLIELVHQASKAER 180

Query: 181 QLQQDMKSNRGVSFSTKNAASGSKFTXXXXXXXXXXXXXXXXXXXXXYGTSSGKDLAAPN 240
           QLQQDMKSNRGVSFSTKNAASGSKFT                     YGTSSGKDLAAPN
Sbjct: 181 QLQQDMKSNRGVSFSTKNAASGSKFTSRGSGNRGAFSSSSGGARSSNYGTSSGKDLAAPN 240

Query: 241 ERKNAANTSSTSWVLPPRXXXXXXXXXXXXXXXXXXXQTIEPSL 284
           ERKNAANTSSTSWVLPPR                   QTIEPSL
Sbjct: 241 ERKNAANTSSTSWVLPPRVVEFNASNVVVVVMLLESVQTIEPSL 284



>Os11g0413500 
          Length = 428

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 101 EHGLEESGTDEENLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIV 160
           EH      T  + LKQG LSVD YYKEME  M R  V E++E ++ARF++GL+ +++  V
Sbjct: 187 EHYTRSLYTRLQQLKQGDLSVDAYYKEMELLMSRTGVTENDEATMARFLNGLNDDVKERV 246

Query: 161 EFQQYRNLIELVHQASKAERQLQQDMKSNRGVSF 194
           E   Y ++  +VH A + E+QL     ++R  SF
Sbjct: 247 EISYYYDIQSMVHIAQRVEQQLTS-RHTSRSCSF 279



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.123    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,048,740
Number of extensions: 165912
Number of successful extensions: 386
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 5
Length of query: 284
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 184
Effective length of database: 11,814,401
Effective search space: 2173849784
Effective search space used: 2173849784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 155 (64.3 bits)