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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0188800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Coenzyme Q biosynthesis Coq4 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0249) R2 : 0.000946
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0345 (0.0525) R2dN8 : 0.00122 R2N8 : 0.000946
σ : 0.469
deviance : 101.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
96.97 0.463 2.94 -0.0806 0.0773 -0.305 0.136 3.3 0.0246 14.3 0.4782 9 -- --
99.8 0.465 2.95 -0.0967 0.0849 0.397 -0.0149 -- 0.0322 14.5 3.273e-06 8 -- --
97.04 0.459 2.94 -0.0806 0.0773 -0.305 -- 3.3 0.0246 14.3 0.4782 9 -- --
99.77 0.465 2.95 -0.0923 0.0956 0.409 -- -- 0.0365 15.4 0.04814 8 -- --
97.36 0.46 2.94 -0.0733 -- -0.415 -- 3.62 0.0217 -- 0.4909 9 -- --
100.64 0.47 2.95 -0.0696 0.0702 -- -0.0952 -- 0.0286 15.5 -- -- -- --
100.67 0.47 2.95 -0.0713 0.0699 -- -- -- 0.0281 15.6 -- -- -- --
100.26 0.466 2.95 -0.0932 -- 0.349 -- -- 0.0328 -- 0.05518 8 -- --
99.99 0.466 2.94 -- 0.0972 0.394 -- -- 0.0463 15.4 0.09978 8 -- --
100.94 0.469 2.95 -0.0742 -- -- -- -- 0.0262 -- -- -- -- --
100.8 0.47 2.95 -- 0.0713 -- -- -- 0.036 15.6 -- -- -- --
100.48 0.467 2.95 -- -- 0.325 -- -- 0.0426 -- 0.05624 8 -- --
101.09 0.469 2.95 -- -- -- -- -- 0.0345 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 92.28 humidity 90.0 1440 > th dose dependent rect. 10 2
3 92.39 humidity 90.0 1440 > th dose independent rect. 10 2
4 92.42 precipitation 0.1 1440 > th dose independent rect. 9 1
5 92.42 precipitation 0.1 1440 > th dose dependent rect. 9 1
17 93.52 precipitation 0.1 1440 < th dose independent rect. 9 1
18 93.52 precipitation 0.1 1440 < th dose dependent rect. 9 1
19 94.68 precipitation 0.1 1440 > th dose independent rect. 6 1
21 94.68 precipitation 0.1 1440 > th dose dependent rect. 6 1
23 94.81 wind 1.0 4320 < th dose dependent rect. 5 1
24 94.86 precipitation 0.1 1440 < th dose independent rect. 8 4
25 94.86 precipitation 0.1 1440 < th dose dependent rect. 8 4
26 94.92 precipitation 0.1 1440 > th dose independent rect. 2 1
27 94.92 precipitation 0.1 1440 > th dose dependent rect. 2 1
32 94.99 wind 1.0 90 < th dose independent rect. 22 1
33 95.08 humidity 90.0 1440 < th dose independent rect. 10 2
34 95.10 wind 1.0 10 < th dose dependent rect. 11 2
40 95.22 precipitation 0.1 1440 < th dose independent rect. 6 1
41 95.22 precipitation 0.1 1440 < th dose dependent rect. 6 1
45 95.34 wind 1.0 10 < th dose independent rect. 23 1
49 95.34 wind 1.0 10 < th dose dependent rect. 23 1
55 95.52 wind 1.0 4320 < th dose dependent rect. 3 3
56 95.55 temperature 20.0 90 < th dose independent rect. 22 1
57 95.58 wind 1.0 90 < th dose dependent rect. 22 1
61 95.71 wind 1.0 1440 > th dose independent rect. 11 1
64 95.81 wind 1.0 30 < th dose dependent rect. 22 5
65 95.84 radiation 10.0 10 > th dose independent rect. 6 1
91 95.84 radiation 10.0 10 > th dose dependent rect. 6 1
143 96.00 wind 1.0 10 < th dose dependent rect. 11 14
145 96.02 wind 1.0 10 < th dose dependent rect. 6 18
153 96.07 wind 1.0 1440 < th dose independent rect. 11 1
157 96.08 wind 1.0 4320 < th dose independent rect. 3 3
163 96.15 radiation 1.0 30 < th dose dependent rect. 3 23
164 96.16 radiation 1.0 30 < th dose independent rect. 3 23
165 96.17 wind 1.0 90 < th dose dependent rect. 9 16
169 96.23 wind 1.0 1440 < th dose dependent rect. 11 1
174 96.26 wind 1.0 30 < th dose independent rect. 10 3
178 96.28 precipitation 0.1 1440 < th dose independent rect. 2 1
179 96.28 precipitation 0.1 1440 < th dose dependent rect. 2 1
182 96.33 wind 1.0 90 < th dose independent rect. 9 16
188 96.36 wind 1.0 10 < th dose independent rect. 22 5
196 96.40 temperature 30.0 90 > th dose dependent rect. 10 1
211 96.48 wind 1.0 1440 < th dose independent rect. 22 1
215 96.51 wind 1.0 10 < th dose independent rect. 13 12
216 96.51 atmosphere 1000.0 90 < th dose dependent rect. 10 3
253 96.61 wind 1.0 1440 > th dose independent rect. 3 1
254 96.61 wind 1.0 1440 > th dose independent rect. 22 1
255 96.61 wind 1.0 10 < th dose independent rect. 6 21
280 96.65 wind 1.0 10 < th dose independent rect. 11 14
282 96.65 temperature 20.0 90 < th dose dependent rect. 22 1
286 96.66 wind 3.0 4320 > th dose independent rect. 17 12
293 96.68 wind 3.0 4320 < th dose independent rect. 17 12
294 96.68 wind 7.0 30 < th dose dependent rect. 23 13
297 96.69 humidity 90.0 14400 > th dose dependent rect. 4 1
301 96.70 wind 1.0 4320 > th dose independent rect. 3 3
306 96.72 atmosphere 1005.0 90 > th dose dependent rect. 1 7
349 96.78 wind 1.0 1440 < th dose independent rect. 3 1
354 96.80 wind 1.0 4320 < th dose independent rect. 5 1
390 96.87 temperature 30.0 90 > th dose independent rect. 10 1
393 96.87 wind 1.0 10 < th dose dependent sin 17 NA
403 96.89 atmosphere 1010.0 43200 < th dose dependent rect. 23 1
404 96.90 atmosphere 1000.0 90 < th dose independent rect. 11 2
407 96.90 atmosphere 1010.0 43200 < th dose dependent rect. 21 1
505 97.00 wind 1.0 10 < th dose independent rect. 6 19
520 97.02 wind 3.0 10 < th dose independent rect. 23 14
547 97.03 atmosphere 1000.0 10 < th dose dependent rect. 11 1
556 97.03 wind 9.0 4320 < th dose dependent rect. 17 13
566 97.04 radiation 10.0 43200 < th dose dependent rect. 24 2
605 97.07 wind 1.0 4320 > th dose dependent rect. 17 13
619 97.09 radiation 10.0 30 > th dose independent rect. 16 16
691 97.13 atmosphere 1010.0 43200 < th dose dependent sin 12 NA
698 97.14 wind 1.0 1440 > th dose independent rect. 8 4
759 97.18 atmosphere 1005.0 43200 > th dose independent rect. 5 2
766 97.18 humidity 90.0 14400 > th dose dependent rect. 3 3
775 97.19 radiation 1.0 30 > th dose independent sin 13 NA
777 97.19 wind 3.0 90 < th dose independent rect. 22 15
778 97.19 atmosphere 1010.0 43200 < th dose dependent rect. 4 1
779 97.19 wind 3.0 1440 < th dose dependent rect. 8 4
794 97.20 wind 3.0 4320 > th dose independent sin 13 NA
795 97.20 radiation 1.0 30 < th dose independent sin 13 NA
814 97.21 wind 5.0 14400 < th dose dependent rect. 21 1
825 97.21 wind 9.0 90 < th dose dependent rect. 10 15
863 97.23 wind 1.0 90 < th dose independent rect. 17 8
888 97.24 atmosphere 1005.0 43200 < th dose independent rect. 6 1
889 97.24 atmosphere 1005.0 43200 < th dose independent rect. 4 3
890 97.24 wind 3.0 4320 > th dose independent rect. 21 4
910 97.25 wind 3.0 4320 < th dose independent sin 13 NA
944 97.26 atmosphere 1005.0 43200 > th dose independent rect. 5 4
993 97.28 humidity 90.0 10 > th dose independent rect. 2 1
994 97.28 humidity 90.0 270 > th dose independent rect. 10 1