BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0188800 Os05g0188800|Os05g0188800
         (329 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0188800  Coenzyme Q biosynthesis Coq4 family protein         682   0.0  
Os04g0674200  Coenzyme Q biosynthesis Coq4 family protein         469   e-132

>Os05g0188800 Coenzyme Q biosynthesis Coq4 family protein
          Length = 329

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/329 (100%), Positives = 329/329 (100%)

Query: 1   MFLVGLCGLSKSLSQASPTLVGRIVFREVVRPITDWPIILQLGHSELRIHGRRAQLYAGG 60
           MFLVGLCGLSKSLSQASPTLVGRIVFREVVRPITDWPIILQLGHSELRIHGRRAQLYAGG
Sbjct: 1   MFLVGLCGLSKSLSQASPTLVGRIVFREVVRPITDWPIILQLGHSELRIHGRRAQLYAGG 60

Query: 61  GDGEDHVTCGSARRQRRSISSLPPHDSEAQPSGERERSTARVMQGARVNLKGWQQAAVAF 120
           GDGEDHVTCGSARRQRRSISSLPPHDSEAQPSGERERSTARVMQGARVNLKGWQQAAVAF
Sbjct: 61  GDGEDHVTCGSARRQRRSISSLPPHDSEAQPSGERERSTARVMQGARVNLKGWQQAAVAF 120

Query: 121 GSAFGALLDPRRADLIATLGETTGKPAFHRVLQRMRNSAEGRDVLLERPRVISTQVSHAW 180
           GSAFGALLDPRRADLIATLGETTGKPAFHRVLQRMRNSAEGRDVLLERPRVISTQVSHAW
Sbjct: 121 GSAFGALLDPRRADLIATLGETTGKPAFHRVLQRMRNSAEGRDVLLERPRVISTQVSHAW 180

Query: 181 DMPQNTFGAAYAQFMGSRNFSPDDRPPVRFIDTDELAYVATRAREVHDFWHVLFGLPTNL 240
           DMPQNTFGAAYAQFMGSRNFSPDDRPPVRFIDTDELAYVATRAREVHDFWHVLFGLPTNL
Sbjct: 181 DMPQNTFGAAYAQFMGSRNFSPDDRPPVRFIDTDELAYVATRAREVHDFWHVLFGLPTNL 240

Query: 241 IGETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQHYFPWASKAGLKCTDLMSVY 300
           IGETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQHYFPWASKAGLKCTDLMSVY
Sbjct: 241 IGETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQHYFPWASKAGLKCTDLMSVY 300

Query: 301 YEKHFHEDLEEVRRNWGIIPCPNPKRSSV 329
           YEKHFHEDLEEVRRNWGIIPCPNPKRSSV
Sbjct: 301 YEKHFHEDLEEVRRNWGIIPCPNPKRSSV 329



>Os04g0674200 Coenzyme Q biosynthesis Coq4 family protein
          Length = 227

 Score =  469 bits (1206), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/227 (97%), Positives = 225/227 (99%)

Query: 103 MQGARVNLKGWQQAAVAFGSAFGALLDPRRADLIATLGETTGKPAFHRVLQRMRNSAEGR 162
           MQGARVNLKGWQQAAVAFGSAFGALLDPRRADLIA LGETTGKPAF RVLQRMRNSAEGR
Sbjct: 1   MQGARVNLKGWQQAAVAFGSAFGALLDPRRADLIAALGETTGKPAFQRVLQRMRNSAEGR 60

Query: 163 DVLLERPRVISTQVSHAWDMPQNTFGAAYAQFMGSRNFSPDDRPPVRFIDTDELAYVATR 222
           DVLLERPRVISTQVSHAWDMPQNTFGAAYAQFMGSRNFSPDDRPPVRF+DTDELAYVATR
Sbjct: 61  DVLLERPRVISTQVSHAWDMPQNTFGAAYAQFMGSRNFSPDDRPPVRFMDTDELAYVATR 120

Query: 223 AREVHDFWHVLFGLPTNLIGETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQHY 282
           AREVHDFWHVLFGLPTNLIGETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQHY
Sbjct: 121 AREVHDFWHVLFGLPTNLIGETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQHY 180

Query: 283 FPWASKAGLKCTDLMSVYYEKHFHEDLEEVRRNWGIIPCPNPKRSSV 329
           FPWASKAGLKCTDLMSVYYEKHFHEDL+EVRRNWGIIPCP+PKRSSV
Sbjct: 181 FPWASKAGLKCTDLMSVYYEKHFHEDLDEVRRNWGIIPCPDPKRSSV 227



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,092,463
Number of extensions: 533915
Number of successful extensions: 1513
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1513
Number of HSP's successfully gapped: 2
Length of query: 329
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 228
Effective length of database: 11,762,187
Effective search space: 2681778636
Effective search space used: 2681778636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)