BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0188800 Os05g0188800|Os05g0188800
         (329 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03690.1  | chr2:1122122-1123011 REVERSE LENGTH=227            379   e-105

>AT2G03690.1 | chr2:1122122-1123011 REVERSE LENGTH=227
          Length = 226

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 173/225 (76%), Positives = 199/225 (88%), Gaps = 1/225 (0%)

Query: 102 VMQGARVNLKGWQQAAVAFGSAFGALLDPRRADLIATLGETTGKPAFHRVLQRMRNSAEG 161
           +++ ARV L  WQQAAVA GSA GAL+DPRRADLIA LGETTGKPAF  VL+RM+ S EG
Sbjct: 2   IIERARVPLSRWQQAAVAMGSALGALVDPRRADLIAALGETTGKPAFEMVLERMKKSEEG 61

Query: 162 RDVLLERPRVISTQVSHAWDMPQNTFGAAYAQFMGSRNFSPDDRPPVRFIDTDELAYVAT 221
           R +LLERPRV+S QV HAWD+P+NTFGAAYA+FMGSRNFSPDDRPPVRF++TDELAYVAT
Sbjct: 62  RAILLERPRVVSEQVGHAWDLPENTFGAAYAKFMGSRNFSPDDRPPVRFMETDELAYVAT 121

Query: 222 RAREVHDFWHVLFGLPTNLIGETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQH 281
           RAREVHD WH LFGLPTNLIGE++LKVIEFEQM+LPMCMLSV+GG+ RFNEKQR++F +H
Sbjct: 122 RAREVHDLWHTLFGLPTNLIGESSLKVIEFEQMYLPMCMLSVIGGTVRFNEKQRSMFLKH 181

Query: 282 YFPWASKAGLKCTDLMSVYYEKHFHEDLEEVRRNWGIIPCP-NPK 325
           Y PWA +AG +CTDLM VYYE+HF EDLE+VRR WGIIP P +PK
Sbjct: 182 YLPWAVRAGRQCTDLMCVYYERHFSEDLEQVRRKWGIIPAPQHPK 226



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,217,545
Number of extensions: 296234
Number of successful extensions: 598
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,392,385
Effective search space: 1930248550
Effective search space used: 1930248550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)