Os05g0185800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0185800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.14 | 0.286 | 12.5 | 0.22 | 1.3 | 0.63 | -0.303 | -0.162 | 0.24 | 7.19 | 82.26 | 1371 | -- | -- |
| 36.77 | 0.282 | 12.5 | 0.224 | 1.32 | 0.633 | -0.285 | -- | 0.242 | 7.35 | 81 | 1246 | -- | -- |
| 37.01 | 0.283 | 12.5 | 0.203 | 1.32 | 0.648 | -- | -0.158 | 0.239 | 7.32 | 81.03 | 1261 | -- | -- |
| 36.98 | 0.283 | 12.5 | 0.219 | 1.32 | 0.659 | -- | -- | 0.248 | 7.34 | 81 | 1243 | -- | -- |
| 126.91 | 0.525 | 12.5 | 0.277 | -- | 0.699 | -- | -0.104 | 0.241 | -- | 88.33 | 1370 | -- | -- |
| 46.33 | 0.319 | 12.5 | 0.33 | 1.33 | -- | -0.274 | -- | 0.223 | 7.04 | -- | -- | -- | -- |
| 46.52 | 0.319 | 12.5 | 0.325 | 1.33 | -- | -- | -- | 0.224 | 7.02 | -- | -- | -- | -- |
| 126.91 | 0.525 | 12.5 | 0.265 | -- | 0.705 | -- | -- | 0.252 | -- | 86.7 | 1369 | -- | -- |
| 38.19 | 0.288 | 12.5 | -- | 1.33 | 0.689 | -- | -- | 0.241 | 7.39 | 79.68 | 1228 | -- | -- |
| 138.93 | 0.551 | 12.5 | 0.351 | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
| 49.3 | 0.328 | 12.5 | -- | 1.33 | -- | -- | -- | 0.188 | 7.01 | -- | -- | -- | -- |
| 128.63 | 0.528 | 12.5 | -- | -- | 0.739 | -- | -- | 0.235 | -- | 84.42 | 1367 | -- | -- |
| 142.18 | 0.557 | 12.5 | -- | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.42 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 4 |
| 2 | 34.45 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 12 |
| 11 | 35.15 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 19 |
| 25 | 35.79 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 26 | 35.85 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 47 | 36.17 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 51 | 36.26 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 21 |
| 56 | 36.32 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 63 | 36.34 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 66 | 36.36 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 73 | 36.41 | humidity | 80 | 1440 | < th | dose dependent | sin | 13 | NA |
| 110 | 36.65 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 161 | 36.86 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 11 |
| 163 | 36.88 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 13 |
| 187 | 36.97 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 15 |
| 192 | 36.99 | temperature | 30 | 720 | > th | dose independent | sin | 13 | NA |
| 217 | 37.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 221 | 37.07 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 10 |
| 225 | 37.09 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 227 | 37.09 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 4 |
| 237 | 37.12 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 250 | 37.14 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 20 |
| 258 | 37.15 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 290 | 37.23 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 4 |
| 340 | 37.27 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 342 | 37.28 | humidity | 60 | 720 | > th | dose independent | rect. | 15 | 4 |
| 375 | 37.31 | humidity | 70 | 1440 | < th | dose independent | sin | 13 | NA |
| 427 | 37.40 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 435 | 37.41 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 11 |
| 459 | 37.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 19 |
| 491 | 37.44 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 497 | 37.45 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 507 | 37.46 | humidity | 70 | 1440 | > th | dose independent | sin | 12 | NA |
| 529 | 37.47 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 555 | 37.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 577 | 37.51 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 586 | 37.52 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 588 | 37.52 | humidity | 50 | 1440 | > th | dose dependent | sin | 18 | NA |
| 608 | 37.54 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 647 | 37.57 | temperature | 30 | 720 | > th | dose dependent | sin | 12 | NA |
| 651 | 37.57 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 654 | 37.57 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 669 | 37.58 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 671 | 37.59 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 681 | 37.59 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 753 | 37.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 760 | 37.62 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 884 | 37.66 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 950 | 37.69 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 981 | 37.71 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 983 | 37.71 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 984 | 37.71 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 16 |