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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0172300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF632 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.85 (0.038) R2 : 0.558
β1 : 1.71 (0.144) R2dD : 0.155 R2D : 0.0691
β2 : 3.91 (0.258) R2dC : 1.55 R2C : -0.00139
β3 : -1.76 (0.219) R2dE : 0.433 R2E : -1.12
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.439 (0.0817) R2dN8 : 0.0357 R2N8 : -0.0132
σ : 0.71
deviance : 232.35
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_____
C
peak time of C : 16.6
E
wheather : temperature
threshold : 19.2
memory length : 351
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.75
open length of G : 14.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
210.31 0.681 3.86 1.72 3.98 -1.82 3.6 -0.54 0.434 16.6 19.79 314 5.95 14.8
208.48 0.672 3.86 1.78 4.14 -1.99 3.08 -- 0.435 16.6 19.8 366 5.7 14.3
218.01 0.688 3.84 1.84 3.9 -1.73 -- 1.76 0.427 16.6 19.22 329 6.05 14.4
232.35 0.71 3.85 1.71 3.91 -1.76 -- -- 0.439 16.6 19.2 351 5.75 14.6
391.88 0.927 3.84 1.38 -- 0.776 -- 1.61 0.216 -- 18 1290 6.52 15.2
243.09 0.731 3.85 1.42 2.02 -- 2.47 -- 0.335 17.2 -- -- -- --
258.39 0.753 3.85 1.42 2.04 -- -- -- 0.346 17.2 -- -- -- --
281.53 0.781 3.81 1.4 -- 1.82 -- -- 0.347 -- -10.14 4779 6.59 14.6
297.06 0.803 3.9 -- 3.71 -1.58 -- -- 0.172 16.5 13.95 319 5.69 14.8
476.16 1.02 3.82 1.35 -- -- -- -- 0.295 -- -- -- -- --
311.49 0.826 3.88 -- 2.02 -- -- -- 0.188 17.2 -- -- -- --
307.54 0.817 3.88 -- -- 2.24 -- -- 0.255 -- 12.2 4886 7.36 10.4
524.09 1.07 3.86 -- -- -- -- -- 0.145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 216.01 temperature 20 270 > th dose independent rect. 6 15
2 217.32 wind 1 10 < th dose independent rect. 22 1
4 217.32 wind 1 10 < th dose dependent rect. 22 1
16 218.97 temperature 20 720 > th dose independent rect. 6 7
22 220.82 temperature 15 30 > th dose dependent rect. 17 21
28 221.33 temperature 15 270 > th dose dependent rect. 17 19
40 221.65 temperature 15 30 > th dose dependent rect. 19 19
41 221.68 temperature 15 270 > th dose dependent rect. 5 6
72 222.73 temperature 20 720 < th dose independent rect. 5 11
80 222.88 temperature 20 30 > th dose dependent rect. 22 16
82 222.92 temperature 20 720 < th dose independent rect. 6 9
87 222.98 temperature 10 270 > th dose dependent rect. 6 17
92 223.04 temperature 20 30 > th dose independent rect. 6 18
104 223.33 radiation 20 270 > th dose independent rect. 11 5
117 223.49 atmosphere 1005 270 > th dose dependent rect. 11 6
146 223.80 temperature 20 270 > th dose dependent rect. 8 2
150 223.88 temperature 20 720 > th dose independent sin 2 NA
184 224.13 temperature 20 30 > th dose independent rect. 8 16
191 224.17 radiation 1 270 > th dose dependent rect. 11 19
195 224.20 radiation 1 270 > th dose dependent rect. 11 7
250 224.60 temperature 10 10 > th dose dependent rect. 8 16
265 224.65 temperature 10 90 > th dose dependent rect. 8 16
266 224.66 atmosphere 1005 270 > th dose dependent rect. 13 2
300 224.88 radiation 30 270 > th dose independent rect. 12 3
342 225.08 temperature 20 720 < th dose independent sin 1 NA
353 225.18 temperature 20 30 > th dose independent rect. 6 8
378 225.39 radiation 30 270 > th dose independent sin 16 NA
393 225.51 temperature 20 720 > th dose independent rect. 2 16
475 225.85 radiation 10 270 > th dose dependent sin 16 NA
532 226.17 radiation 30 270 < th dose independent rect. 6 16
576 226.33 atmosphere 1005 10 > th dose dependent rect. 14 3
648 226.58 radiation 1 90 > th dose dependent rect. 14 16
656 226.60 radiation 30 270 < th dose independent sin 16 NA
694 226.82 humidity 60 270 > th dose independent rect. 5 6
721 226.87 temperature 20 90 > th dose independent rect. 17 20
744 226.97 wind 7 270 < th dose independent rect. 10 7
814 227.17 radiation 1 90 > th dose dependent rect. 14 5
840 227.27 wind 7 270 < th dose independent rect. 11 18
866 227.37 temperature 20 270 > th dose independent rect. 10 7
875 227.41 wind 7 43200 > th dose independent rect. 21 2
876 227.41 radiation 20 270 < th dose independent rect. 11 12
891 227.42 atmosphere 1015 270 < th dose independent rect. 17 18
911 227.44 wind 7 43200 < th dose independent rect. 21 2
919 227.47 atmosphere 1005 30 > th dose independent rect. 14 3
935 227.50 humidity 50 10 > th dose independent rect. 17 21
936 227.50 temperature 20 720 < th dose dependent rect. 6 1
937 227.50 wind 5 43200 > th dose dependent rect. 21 2
942 227.51 humidity 60 270 > th dose independent rect. 17 18
944 227.52 temperature 25 90 > th dose independent rect. 21 16
950 227.55 radiation 20 270 < th dose independent rect. 14 9
957 227.56 wind 3 43200 < th dose independent rect. 10 1
967 227.58 wind 7 270 < th dose independent rect. 11 5