Os05g0162500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0162500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 279.85 | 0.786 | 4.43 | -2.45 | 1.28 | -2.61 | 0.0896 | -0.574 | -0.333 | 22.9 | 23.2 | 7 | -- | -- |
| 280.45 | 0.786 | 4.44 | -2.51 | 1.27 | -2.55 | -0.0625 | -- | -0.34 | 22.9 | 23.1 | 6 | -- | -- |
| 279.82 | 0.779 | 4.43 | -2.46 | 1.28 | -2.62 | -- | -0.523 | -0.33 | 22.9 | 23.1 | 6 | -- | -- |
| 280.26 | 0.78 | 4.44 | -2.51 | 1.27 | -2.55 | -- | -- | -0.341 | 22.9 | 23.11 | 6 | -- | -- |
| 371.9 | 0.898 | 4.39 | -2.37 | -- | -1.84 | -- | 0.132 | -0.227 | -- | 22.7 | 5 | -- | -- |
| 361.53 | 0.891 | 4.36 | -1.99 | 0.953 | -- | 0.0409 | -- | 0.00023 | 22.1 | -- | -- | -- | -- |
| 361.53 | 0.89 | 4.36 | -1.99 | 0.953 | -- | -- | -- | 0.000129 | 22.1 | -- | -- | -- | -- |
| 327.53 | 0.843 | 4.42 | -2.51 | -- | -2.29 | -- | -- | -0.163 | -- | 34.7 | 709 | -- | -- |
| 433.27 | 0.975 | 4.35 | -- | 1.13 | -1.55 | -- | -- | 0.0498 | 22.5 | 23.11 | 6 | -- | -- |
| 416.48 | 0.954 | 4.33 | -1.98 | -- | -- | -- | -- | 0.00169 | -- | -- | -- | -- | -- |
| 466.01 | 1.01 | 4.31 | -- | 0.944 | -- | -- | -- | 0.222 | 22 | -- | -- | -- | -- |
| 482.47 | 1.02 | 4.32 | -- | -- | -1.48 | -- | -- | 0.0409 | -- | 39.64 | 633 | -- | -- |
| 519.68 | 1.06 | 4.28 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 276.08 | temperature | 15 | 270 | > th | dose dependent | sin | 15 | NA |
| 2 | 276.12 | temperature | 15 | 90 | > th | dose dependent | sin | 13 | NA |
| 22 | 279.47 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 23 |
| 24 | 279.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 27 | 280.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 35 | 280.68 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 15 |
| 37 | 280.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 14 |
| 44 | 281.62 | temperature | 30 | 90 | < th | dose dependent | sin | 13 | NA |
| 50 | 281.98 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 23 |
| 51 | 282.06 | temperature | 30 | 10 | < th | dose dependent | sin | 13 | NA |
| 55 | 282.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 64 | 282.64 | temperature | 25 | 270 | < th | dose dependent | sin | 17 | NA |
| 66 | 282.71 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 20 |
| 83 | 283.68 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 86 | 283.76 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 19 |
| 98 | 284.13 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 116 | 284.88 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 22 |
| 121 | 285.00 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 131 | 285.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 137 | 285.34 | temperature | 20 | 90 | > th | dose independent | sin | 10 | NA |
| 148 | 285.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 155 | 285.81 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 21 |
| 160 | 285.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 165 | 286.05 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 172 | 286.21 | temperature | 25 | 90 | < th | dose dependent | rect. | 14 | 21 |
| 177 | 286.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 178 | 286.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 179 | 286.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 182 | 286.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 185 | 286.35 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 199 | 286.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 206 | 286.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 216 | 286.77 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 217 | 286.78 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 225 | 286.87 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 250 | 287.15 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 271 | 287.45 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 272 | 287.50 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 23 |
| 280 | 287.65 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 284 | 287.73 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 367 | 289.04 | temperature | 20 | 90 | < th | dose independent | sin | 11 | NA |
| 385 | 289.20 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 23 |
| 396 | 289.33 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 411 | 289.48 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 499 | 290.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 508 | 290.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 565 | 291.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 637 | 291.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 709 | 292.21 | temperature | 20 | 90 | > th | dose independent | rect. | 2 | 23 |
| 776 | 292.71 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 785 | 292.80 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 17 |
| 910 | 293.55 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 18 |
| 935 | 293.67 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 15 |