Os05g0160800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA polymerase epsilon subunit B family protein.
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Os05g0160800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA polymerase epsilon subunit B family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.02 | 0.441 | 3.11 | 1.5 | 0.155 | -1.14 | -0.358 | 9.33 | -0.00204 | 6.68 | 29.86 | 4179 | -- | -- |
| 91.8 | 0.446 | 3.24 | 0.399 | 0.179 | -0.36 | -0.506 | -- | 0.184 | 5.95 | 0.09669 | 39973 | -- | -- |
| 88.21 | 0.437 | 3.11 | 1.5 | 0.156 | -1.15 | -- | 9.44 | 0.00526 | 7.63 | 29.82 | 4177 | -- | -- |
| 91.6 | 0.446 | 3.26 | 0.296 | 0.159 | -0.254 | -- | -- | 0.099 | 7.64 | -12.32 | 39640 | -- | -- |
| 89.54 | 0.441 | 3.11 | 1.54 | -- | -1.15 | -- | 9.46 | 0.0183 | -- | 29.64 | 4177 | -- | -- |
| 92.09 | 0.45 | 3.28 | 0.0446 | 0.173 | -- | -0.287 | -- | 0.00194 | 6.96 | -- | -- | -- | -- |
| 92.23 | 0.45 | 3.28 | 0.0406 | 0.174 | -- | -- | -- | 0.00334 | 7.73 | -- | -- | -- | -- |
| 93.17 | 0.45 | 3.26 | 0.284 | -- | -0.248 | -- | -- | 0.105 | -- | 4.784 | 39681 | -- | -- |
| 91.89 | 0.446 | 3.27 | -- | 0.173 | -0.125 | -- | -- | 0.0207 | 7.63 | 0.118 | 6067 | -- | -- |
| 93.87 | 0.453 | 3.28 | 0.0428 | -- | -- | -- | -- | 0.00585 | -- | -- | -- | -- | -- |
| 92.27 | 0.449 | 3.28 | -- | 0.175 | -- | -- | -- | -0.00118 | 7.71 | -- | -- | -- | -- |
| 93.49 | 0.45 | 3.28 | -- | -- | -0.137 | -- | -- | 0.0259 | -- | 4.675 | 6384 | -- | -- |
| 93.92 | 0.452 | 3.28 | -- | -- | -- | -- | -- | 0.0011 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.96 | humidity | 80 | 90 | < th | dose independent | rect. | 24 | 7 |
| 7 | 73.20 | humidity | 80 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 14 | 73.23 | humidity | 80 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 38 | 73.54 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 49 | 73.83 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 63 | 73.83 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 80 | 73.89 | humidity | 80 | 10 | < th | dose dependent | rect. | 20 | 12 |
| 82 | 73.96 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 202 | 73.98 | humidity | 70 | 90 | < th | dose dependent | rect. | 18 | 14 |
| 208 | 74.08 | humidity | 70 | 90 | < th | dose independent | rect. | 18 | 14 |
| 215 | 74.09 | radiation | 20 | 30 | > th | dose dependent | rect. | 16 | 16 |
| 627 | 77.05 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 726 | 78.49 | radiation | 30 | 30 | < th | dose independent | sin | 11 | NA |
| 813 | 80.74 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 892 | 81.78 | humidity | 80 | 720 | < th | dose independent | rect. | 1 | 6 |
| 898 | 81.91 | radiation | 20 | 10 | > th | dose independent | sin | 11 | NA |
| 922 | 82.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 7 |
| 943 | 82.62 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 6 | 4 |
| 945 | 82.62 | humidity | 80 | 720 | < th | dose dependent | rect. | 21 | 11 |
| 947 | 82.63 | humidity | 80 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 997 | 82.93 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 1 |