BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0160800 Os05g0160800|AK073230
         (372 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22110.1  | chr5:7331071-7334178 REVERSE LENGTH=527            575   e-164

>AT5G22110.1 | chr5:7331071-7334178 REVERSE LENGTH=527
          Length = 526

 Score =  575 bits (1482), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 267/370 (72%), Positives = 310/370 (83%)

Query: 1   MTEDDNCEITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVPIDLSNAKITSGFFV 60
           M++ +N EI+SIQSLI   GR+W+MGVISQLE+  FYLEDL+ +V IDLS AKIT+GFF 
Sbjct: 157 MSQFENNEISSIQSLISQRGRKWVMGVISQLEDGHFYLEDLSASVEIDLSKAKITTGFFT 216

Query: 61  ENTVIVAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGGGVIPTEETVRLSTLE 120
           ENT+I+AEGE+  NGIFQV TCGFPPLEDR+ +L      DFFGGG +  EE ++L+ LE
Sbjct: 217 ENTIILAEGEMQVNGIFQVITCGFPPLEDRDKTLKAHSEYDFFGGGTLTKEEMIKLADLE 276

Query: 121 KKAMNDMFVILSDVWLDNYETMEKLGVVLDGYDSLEAVPSLFVLMGNFCSRPCNLAFNSF 180
           ++A+ND FVILSD+WLD+ E M KL  VLDG++S+E VPSLFV MGNFCSRPCNL+F S+
Sbjct: 277 RQAVNDTFVILSDIWLDDEEVMRKLETVLDGFESVETVPSLFVFMGNFCSRPCNLSFGSY 336

Query: 181 EELRLQFGKLGEMIAARSRLKEHSRFLFIPGPDDAGPSKALPRCALPKYLTEELQKHIPN 240
             LR QFGKLG MI    RLKE+SRFLFIPGP+DAGPS  LPRCALPKYLTEEL+  IPN
Sbjct: 337 SSLREQFGKLGRMIGNHPRLKENSRFLFIPGPEDAGPSTVLPRCALPKYLTEELRNIIPN 396

Query: 241 AIFVSNPCRVKFYTQEIVFFRQDLLYRMRRSCLIPPTTEETSDPFEHLVATITHQSHLCP 300
           AIF SNPCRVKFY QEIVFFRQDLLYRMRRSCL+ P++EET+DPF+HLV TITHQSHLCP
Sbjct: 397 AIFSSNPCRVKFYNQEIVFFRQDLLYRMRRSCLVTPSSEETNDPFKHLVYTITHQSHLCP 456

Query: 301 LPLTVQPIIWSYDHCLRLYPTPHTIVLGDKSDQKAFKYTGITCFNPGSFANDSTFAAYRP 360
           LPL VQPIIW+YDH LRLYPTPHTIVLGDKS+Q+  K+ G TCFNPGSF+ DSTF AYRP
Sbjct: 457 LPLMVQPIIWNYDHALRLYPTPHTIVLGDKSEQEVCKFGGTTCFNPGSFSTDSTFVAYRP 516

Query: 361 CTKEVELSAL 370
            T+EVELSAL
Sbjct: 517 STQEVELSAL 526



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,533,786
Number of extensions: 373669
Number of successful extensions: 789
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,364,969
Effective search space: 2275271568
Effective search space used: 2275271568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)