BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0160800 Os05g0160800|AK073230
         (372 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0160800  DNA polymerase epsilon subunit B family protein     772   0.0  
Os08g0466050  DNA polymerase epsilon subunit B family protein     531   e-151

>Os05g0160800 DNA polymerase epsilon subunit B family protein
          Length = 372

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/372 (100%), Positives = 372/372 (100%)

Query: 1   MTEDDNCEITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVPIDLSNAKITSGFFV 60
           MTEDDNCEITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVPIDLSNAKITSGFFV
Sbjct: 1   MTEDDNCEITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVPIDLSNAKITSGFFV 60

Query: 61  ENTVIVAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGGGVIPTEETVRLSTLE 120
           ENTVIVAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGGGVIPTEETVRLSTLE
Sbjct: 61  ENTVIVAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGGGVIPTEETVRLSTLE 120

Query: 121 KKAMNDMFVILSDVWLDNYETMEKLGVVLDGYDSLEAVPSLFVLMGNFCSRPCNLAFNSF 180
           KKAMNDMFVILSDVWLDNYETMEKLGVVLDGYDSLEAVPSLFVLMGNFCSRPCNLAFNSF
Sbjct: 121 KKAMNDMFVILSDVWLDNYETMEKLGVVLDGYDSLEAVPSLFVLMGNFCSRPCNLAFNSF 180

Query: 181 EELRLQFGKLGEMIAARSRLKEHSRFLFIPGPDDAGPSKALPRCALPKYLTEELQKHIPN 240
           EELRLQFGKLGEMIAARSRLKEHSRFLFIPGPDDAGPSKALPRCALPKYLTEELQKHIPN
Sbjct: 181 EELRLQFGKLGEMIAARSRLKEHSRFLFIPGPDDAGPSKALPRCALPKYLTEELQKHIPN 240

Query: 241 AIFVSNPCRVKFYTQEIVFFRQDLLYRMRRSCLIPPTTEETSDPFEHLVATITHQSHLCP 300
           AIFVSNPCRVKFYTQEIVFFRQDLLYRMRRSCLIPPTTEETSDPFEHLVATITHQSHLCP
Sbjct: 241 AIFVSNPCRVKFYTQEIVFFRQDLLYRMRRSCLIPPTTEETSDPFEHLVATITHQSHLCP 300

Query: 301 LPLTVQPIIWSYDHCLRLYPTPHTIVLGDKSDQKAFKYTGITCFNPGSFANDSTFAAYRP 360
           LPLTVQPIIWSYDHCLRLYPTPHTIVLGDKSDQKAFKYTGITCFNPGSFANDSTFAAYRP
Sbjct: 301 LPLTVQPIIWSYDHCLRLYPTPHTIVLGDKSDQKAFKYTGITCFNPGSFANDSTFAAYRP 360

Query: 361 CTKEVELSALES 372
           CTKEVELSALES
Sbjct: 361 CTKEVELSALES 372



>Os08g0466050 DNA polymerase epsilon subunit B family protein
          Length = 311

 Score =  531 bits (1369), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 272/372 (73%), Positives = 284/372 (76%), Gaps = 61/372 (16%)

Query: 1   MTEDDNCEITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVPIDLSNAKITSGFFV 60
           MTEDDNCE +                   +L+    +L           +  KITSGFFV
Sbjct: 1   MTEDDNCEDSR---------------SAPKLDLIHNFLLTQNSITSFLSTEHKITSGFFV 45

Query: 61  ENTVIVAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGGGVIPTEETVRLSTLE 120
           ENTVI+AEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGGGVI  EETVRLSTLE
Sbjct: 46  ENTVILAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGGGVIAAEETVRLSTLE 105

Query: 121 KKAMNDMFVILSDVWLDNYETMEKLGVVLDGYDSLEAVPSLFVLMGNFCSRPCNLAFNSF 180
           KKAMNDMFVILSDVWLD+ E                                        
Sbjct: 106 KKAMNDMFVILSDVWLDSSE---------------------------------------- 125

Query: 181 EELRLQFGKLGEMIAARSRLKEHSRFLFIPGPDDAGPSKALPRCALPKYLTEELQKHIPN 240
                 FGKLGEMIAARSRLKEHSRFLFIPGP+DAGPSKALPRC LPKYLTEELQKHIPN
Sbjct: 126 ------FGKLGEMIAARSRLKEHSRFLFIPGPEDAGPSKALPRCTLPKYLTEELQKHIPN 179

Query: 241 AIFVSNPCRVKFYTQEIVFFRQDLLYRMRRSCLIPPTTEETSDPFEHLVATITHQSHLCP 300
           AIFVSNPCRVKFYTQEIVFF+QDLLYRMRRSCLIPPTTEETSDPFEHLVATITHQSHLCP
Sbjct: 180 AIFVSNPCRVKFYTQEIVFFQQDLLYRMRRSCLIPPTTEETSDPFEHLVATITHQSHLCP 239

Query: 301 LPLTVQPIIWSYDHCLRLYPTPHTIVLGDKSDQKAFKYTGITCFNPGSFANDSTFAAYRP 360
           LPLTVQPIIW+YDHCLRLYPTPHTIVLGDKS+QKAFKY GITCFNPGSFANDS+FAAYRP
Sbjct: 240 LPLTVQPIIWNYDHCLRLYPTPHTIVLGDKSEQKAFKYAGITCFNPGSFANDSSFAAYRP 299

Query: 361 CTKEVELSALES 372
           CTKEVELSALES
Sbjct: 300 CTKEVELSALES 311



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,168,873
Number of extensions: 563204
Number of successful extensions: 1075
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1075
Number of HSP's successfully gapped: 3
Length of query: 372
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 270
Effective length of database: 11,709,973
Effective search space: 3161692710
Effective search space used: 3161692710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)