Os05g0150000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0001 family protein.
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Os05g0150000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0001 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.94 | 0.22 | 12.3 | -0.287 | 0.276 | 0.524 | 0.325 | 1.37 | -0.241 | 22.7 | 22.04 | 10 | -- | -- |
| 22.75 | 0.224 | 12.3 | -0.496 | 0.285 | 0.638 | 0.0585 | -- | -0.284 | 23.1 | 24.1 | 27 | -- | -- |
| 22.28 | 0.22 | 12.3 | -0.323 | 0.27 | 0.513 | -- | 1.14 | -0.245 | 22.6 | 22.89 | 10 | -- | -- |
| 22.69 | 0.222 | 12.3 | -0.493 | 0.276 | 0.645 | -- | -- | -0.282 | 23.3 | 24.1 | 18 | -- | -- |
| 23.62 | 0.226 | 12.3 | -0.26 | -- | 0.415 | -- | 1.34 | -0.216 | -- | 22.89 | 377 | -- | -- |
| 28.96 | 0.252 | 12.3 | -0.39 | 0.255 | -- | 0.256 | -- | -0.209 | 19.2 | -- | -- | -- | -- |
| 29.12 | 0.253 | 12.3 | -0.395 | 0.255 | -- | -- | -- | -0.208 | 19.3 | -- | -- | -- | -- |
| 24.61 | 0.231 | 12.3 | -0.502 | -- | 0.53 | -- | -- | -0.284 | -- | 23.1 | 405 | -- | -- |
| 29.02 | 0.252 | 12.3 | -- | 0.256 | 0.52 | -- | -- | -0.21 | 22.3 | 24.37 | 9 | -- | -- |
| 32.58 | 0.267 | 12.3 | -0.4 | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
| 33.25 | 0.27 | 12.3 | -- | 0.259 | -- | -- | -- | -0.164 | 19.2 | -- | -- | -- | -- |
| 30.8 | 0.258 | 12.3 | -- | -- | 0.448 | -- | -- | -0.204 | -- | 24.3 | 364 | -- | -- |
| 36.79 | 0.283 | 12.3 | -- | -- | -- | -- | -- | -0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 2 | 21.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 9 | 21.39 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 12 | 21.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 41 | 21.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 77 | 21.85 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 97 | 21.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 111 | 21.96 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 124 | 22.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 155 | 22.09 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 158 | 22.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 172 | 22.17 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 174 | 22.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 177 | 22.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 178 | 22.20 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 180 | 22.21 | temperature | 25 | 270 | > th | dose dependent | sin | 10 | NA |
| 183 | 22.22 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 193 | 22.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 197 | 22.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 203 | 22.27 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 204 | 22.27 | temperature | 25 | 720 | > th | dose dependent | sin | 6 | NA |
| 209 | 22.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 285 | 22.45 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 320 | 22.48 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 345 | 22.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 349 | 22.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 353 | 22.52 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 370 | 22.54 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 15 |
| 528 | 22.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 580 | 22.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 613 | 22.72 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 614 | 22.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 746 | 22.80 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 7 |
| 781 | 22.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 805 | 22.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 811 | 22.85 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 22 |
| 938 | 22.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |