BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0150000 Os05g0150000|AJ441305
         (214 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0150000  Protein of unknown function UPF0001 family pro...   392   e-109
AK110108                                                          130   5e-31

>Os05g0150000 Protein of unknown function UPF0001 family protein
          Length = 214

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/214 (89%), Positives = 192/214 (89%)

Query: 1   AAEGXXXXXXXXXXXXXXXXXXXXXXPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYV 60
           AAEG                      PESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYV
Sbjct: 1   AAEGAAAALRSVLSRAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYV 60

Query: 61  QELIDKASQLPEDIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLG 120
           QELIDKASQLPEDIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLG
Sbjct: 61  QELIDKASQLPEDIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLG 120

Query: 121 RKPLKVLVQVNTSGEESKFGVDPSGCVELAKHVKLGCPNLVFSGLMTIGMLDYSSTPENF 180
           RKPLKVLVQVNTSGEESKFGVDPSGCVELAKHVKLGCPNLVFSGLMTIGMLDYSSTPENF
Sbjct: 121 RKPLKVLVQVNTSGEESKFGVDPSGCVELAKHVKLGCPNLVFSGLMTIGMLDYSSTPENF 180

Query: 181 KALANCRKEVCKELGIPEEQCELSMGMSADFEQA 214
           KALANCRKEVCKELGIPEEQCELSMGMSADFEQA
Sbjct: 181 KALANCRKEVCKELGIPEEQCELSMGMSADFEQA 214



>AK110108 
          Length = 1007

 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 98/155 (63%), Gaps = 17/155 (10%)

Query: 31  RVVAVSKTKPVGVIRGVYD-AGHRCFGENYVQELIDKASQLPEDIEWHFIGNLQSNKARA 89
           R+VA+SK  P   I   +  AG   FGENYVQE++DKA  LP +I WHF+G LQSNK + 
Sbjct: 269 RLVAISKLHPPSAILAAHKKAGQLHFGENYVQEMVDKAKVLPREIRWHFVGGLQSNKGK- 327

Query: 90  LLAGVPNLDMVESVDDQKIANRLDRVVA--DLGRK--PLKVLVQVNTSGEESKFGVDP-- 143
           LLA +PNL ++E++D  K AN L + ++  D  ++  PL+V +QVNTSGE++K G+ P  
Sbjct: 328 LLASIPNLYLLETLDSIKAANVLQKALSSPDAAKRDEPLRVYLQVNTSGEDAKSGLPPVL 387

Query: 144 ---------SGCVELAKHVKLGCPNLVFSGLMTIG 169
                    S  ++LA HV   CPNL   G+MTIG
Sbjct: 388 STDPEQAKESELLKLAVHVITKCPNLRLRGVMTIG 422



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,092,115
Number of extensions: 230505
Number of successful extensions: 519
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)