BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0150000 Os05g0150000|AJ441305
(214 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11930.1 | chr1:4028783-4030298 FORWARD LENGTH=258 314 2e-86
AT4G26860.2 | chr4:13503291-13504693 REVERSE LENGTH=255 293 3e-80
>AT1G11930.1 | chr1:4028783-4030298 FORWARD LENGTH=258
Length = 257
Score = 314 bits (805), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 150/187 (80%), Positives = 163/187 (87%)
Query: 28 ESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKASQLPEDIEWHFIGNLQSNKA 87
+ +RVVAVSKTKPV +IR VYDAG R FGENYVQE+I+KA QLPEDIEWHFIGNLQSNK
Sbjct: 46 DQIRVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIEKAPQLPEDIEWHFIGNLQSNKV 105
Query: 88 RALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKVLVQVNTSGEESKFGVDPSGCV 147
+ LL+GVPNL VESVDD+KIAN LDRVV ++GRKPLKV VQVNTSGE+SKFGV+PSGCV
Sbjct: 106 KPLLSGVPNLVTVESVDDEKIANMLDRVVGNIGRKPLKVFVQVNTSGEDSKFGVEPSGCV 165
Query: 148 ELAKHVKLGCPNLVFSGLMTIGMLDYSSTPENFKALANCRKEVCKELGIPEEQCELSMGM 207
LAKHVK C NL FSGLMTIGM DY+STPENFK LA CR EVCKELGIPEEQCELSMGM
Sbjct: 166 GLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLAKCRSEVCKELGIPEEQCELSMGM 225
Query: 208 SADFEQA 214
S DFE A
Sbjct: 226 SGDFELA 232
>AT4G26860.2 | chr4:13503291-13504693 REVERSE LENGTH=255
Length = 254
Score = 293 bits (751), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 140/198 (70%), Positives = 160/198 (80%), Gaps = 10/198 (5%)
Query: 27 PESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKASQLPEDIEWHFIGNLQSNK 86
PE VRV+ VSKTKPV +IR +YDAGHRCFGENYVQE+IDKA QLPEDIEWHF+G+LQSNK
Sbjct: 32 PERVRVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEIIDKAPQLPEDIEWHFVGHLQSNK 91
Query: 87 ARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKVLVQVNTSGEESKFGVDPSGC 146
A+ LL GVPNL MV VD +K+AN LDR V++LGR PLKVLVQVNTSGE SK G++PS
Sbjct: 92 AKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGRHPLKVLVQVNTSGEVSKSGIEPSSV 151
Query: 147 VELAKHVKLGCPNLVFSGLMTIGMLDYSSTPENFK----------ALANCRKEVCKELGI 196
VELA+HVK CPNLVFSGLMTIGM DY+STPENF+ L+NCR +VCK LG+
Sbjct: 152 VELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFRVYSFPHKPGQTLSNCRADVCKALGM 211
Query: 197 PEEQCELSMGMSADFEQA 214
E+Q ELSMGMS DFE A
Sbjct: 212 AEDQFELSMGMSGDFELA 229
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,027,172
Number of extensions: 158866
Number of successful extensions: 372
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)