Os05g0125000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA-binding SAP domain containing protein.
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Os05g0125000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA-binding SAP domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.61 | 0.18 | 11.8 | -0.124 | 0.284 | -0.666 | -0.253 | -0.0406 | 0.004 | 4.28 | 23 | 1136 | -- | -- |
| 14.61 | 0.178 | 11.8 | -0.128 | 0.284 | -0.655 | -0.251 | -- | 0.00293 | 4.29 | 23.06 | 1129 | -- | -- |
| 14.78 | 0.179 | 11.8 | -0.132 | 0.283 | -0.658 | -- | 0.0313 | 0.0034 | 4.28 | 23 | 1130 | -- | -- |
| 14.79 | 0.179 | 11.8 | -0.128 | 0.283 | -0.665 | -- | -- | 0.00338 | 4.27 | 23 | 1131 | -- | -- |
| 19.03 | 0.203 | 11.8 | -0.129 | -- | -0.724 | -- | -0.014 | 0.00304 | -- | 23.07 | 1127 | -- | -- |
| 19.65 | 0.208 | 11.8 | 0.0517 | 0.317 | -- | -0.304 | -- | 0.11 | 3.84 | -- | -- | -- | -- |
| 19.93 | 0.209 | 11.8 | 0.0559 | 0.315 | -- | -- | -- | 0.111 | 3.81 | -- | -- | -- | -- |
| 19.03 | 0.203 | 11.8 | -0.133 | -- | -0.723 | -- | -- | 0.00128 | -- | 23.07 | 1122 | -- | -- |
| 15.15 | 0.181 | 11.8 | -- | 0.284 | -0.589 | -- | -- | 0.026 | 4.29 | 23.1 | 1102 | -- | -- |
| 25.39 | 0.235 | 11.8 | 0.069 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 20.01 | 0.209 | 11.8 | -- | 0.316 | -- | -- | -- | 0.105 | 3.81 | -- | -- | -- | -- |
| 19.43 | 0.205 | 11.8 | -- | -- | -0.638 | -- | -- | 0.0207 | -- | 23.38 | 1102 | -- | -- |
| 25.52 | 0.236 | 11.8 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 2 | 14.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 6 | 14.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 18 |
| 8 | 14.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 36 | 14.90 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 52 | 14.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 94 | 14.96 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 95 | 14.96 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 123 | 14.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 161 | 14.99 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 223 | 15.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 256 | 15.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 261 | 15.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 263 | 15.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 290 | 15.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 316 | 15.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 321 | 15.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 342 | 15.06 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 365 | 15.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 380 | 15.07 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 390 | 15.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 393 | 15.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 413 | 15.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 416 | 15.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 431 | 15.08 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 438 | 15.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 466 | 15.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 467 | 15.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 469 | 15.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 488 | 15.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 491 | 15.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 550 | 15.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 552 | 15.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 619 | 15.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 698 | 15.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 811 | 15.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 3 |