BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0125000 Os05g0125000|AK105290
         (875 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60410.2  | chr5:24295226-24300792 FORWARD LENGTH=886          859   0.0  
AT5G41580.1  | chr5:16626563-16630659 REVERSE LENGTH=761           60   6e-09

>AT5G60410.2 | chr5:24295226-24300792 FORWARD LENGTH=886
          Length = 885

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/894 (52%), Positives = 597/894 (66%), Gaps = 43/894 (4%)

Query: 3   DLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNS 62
           DL ++CK+KL+YFRIKELKD+L QLGL KQGKKQ+L+DR+L LL+DEQ  R     +KN+
Sbjct: 2   DLEANCKEKLSYFRIKELKDVLTQLGLSKQGKKQELVDRILTLLSDEQAARL--LSKKNT 59

Query: 63  LTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIE-EAYDSFQPEAKVRCICSS 121
           + KEAVAK+VDDTYRKMQ+  A DLA++    SD S   ++ E  D FQPE KVRC+C +
Sbjct: 60  VAKEAVAKLVDDTYRKMQVSGASDLASKGQVSSDTSNLKVKGEPEDPFQPEIKVRCVCGN 119

Query: 122 TMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGE-SAEVPPVFYCELCRLSRADPFWVTAGN 180
           ++  DSMIQCED RC VWQH+ CV++PDKP + +  +P  FYCE+CRL+RADPFWVT  +
Sbjct: 120 SLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTRADPFWVTVAH 179

Query: 181 PLLPVKFVSSGVTNDGTSVPQSVEKSFQLSRSDRETVQRQEYDLQVWCMLLNDKVQFRMQ 240
           PL PV+  ++ + NDG S  QSVE++FQ++R+D++ + + EYD+Q WCMLLNDKV FRMQ
Sbjct: 180 PLSPVRLTATTIPNDGASTMQSVERTFQITRADKDLLAKPEYDVQAWCMLLNDKVLFRMQ 239

Query: 241 WPQYAELHVNGISVRVVTRPGSQLLGINGRDDGPLITTCSREGINKICLSRVDARTFCFG 300
           WPQYA+L VNG+ VR + RPG QLLG+NGRDDGP+IT+C R+G+N+I LS  D R FCFG
Sbjct: 240 WPQYADLQVNGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIFCFG 299

Query: 301 VRIAKRRTVAQVLNLVPKEAEGESFEHALARVRRCLGGGDTAENADSDSDLEVVAESVTV 360
           VR+ KRRT+ QVLNL+P+E +GE+FE ALARVRRC+GGG   +NADSDSD+EVVA+   V
Sbjct: 300 VRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGV 359

Query: 361 NLRCPNSGSRMRIAGRFKPCIHMGCFDLETFVELNQRSRKWQCPICLKNYSLESLMIDPY 420
           NLRCP SGSR+++AGRF PC+HMGCFDL+ FVELNQRSRKWQCPICLKNYS+E +++DPY
Sbjct: 360 NLRCPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPY 419

Query: 421 FNRITSLLRNCNEDVNEVDVKPDGSWRVKGDAASR-----ELSQWHMPDGTLCNPKEDVK 475
           FNRITS +++C+E+V E++VKPDGSWRVK    S      ELSQWH PDG+LC    D+K
Sbjct: 420 FNRITSKMKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIK 479

Query: 476 PAMQNGNEQMMEGTSDGQKSLKIGIKRNPNGIWEVSSKADDKKPSVVG---NRMQNNSGF 532
             M+    +  EG SDG   LK+GI++N NGIWEVS      KP+  G   +  Q   G+
Sbjct: 480 RKMEMLPVK-QEGYSDGPAPLKLGIRKNRNGIWEVS------KPNTNGLSSSNRQEKVGY 532

Query: 533 RALNNIMHMSNSPTSSYRDGEDPSVNQESNRHVDLSLNNGNNEFDSFSLNFGQACNTDDR 592
           +   NI+ MS+S T S RDG+D SVNQ++    D   N    E DS S+N     N  DR
Sbjct: 533 QE-KNIIPMSSSATGSGRDGDDASVNQDAIGTFDFVAN--GMELDSISMNVDSGYNFPDR 589

Query: 593 PQQQHNA-TDVIVLSDSDEENDAMVCPPAVYDNTTTANGSGFPFTTNGI--GYTERYQED 649
            Q       +VIVLSDSD+END ++ P   Y    T  G  FP    GI   Y E     
Sbjct: 590 NQSGEGGNNEVIVLSDSDDENDLVITPGPAYSGCQTDGGLTFPLNPPGIINSYNEDPHSI 649

Query: 650 AGVGTSGLGLLSNNVDDFEMNNWQMHSSYQQPEQ-GFQFFGNDTDVHNTFVGSHNSFGLA 708
           AG G+SGLGL  N+ D+F+   W   S  + PE  GFQ F +D DV    VG H+    +
Sbjct: 650 AG-GSSGLGLF-NDDDEFDTPLWSFPS--ETPEAPGFQLFRSDADVSGGLVGLHHH---S 702

Query: 709 PNDYSLDCNVGVEEASVTPALSV-----CRNSNEMHGSLVDNPLALVGDDPSLQIFLPSQ 763
           P + S + N G   A  T   SV         +E +  LVDNPLA   DDPSLQIFLP++
Sbjct: 703 PLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLVDNPLAFGRDDPSLQIFLPTK 762

Query: 764 PSSVPLQEELSERANAPNGVQSDDWISLTLXXXXXXXXX--XXXXDVNSQPQIPSTETGI 821
           P +   Q     +A+  NG++S+DWISL L                +NS  Q+ + E  +
Sbjct: 763 PDA-SAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGINSSHQMSTREGSM 821

Query: 822 EPLTDAASAFLSTNIERRSGADLNPRRIENIFSHPRQPRSVRPRLCLSIDTDSE 875
           +  T+ AS  L  N  R+  A    +R +N FS PRQ RSVRPR+ LSID+DSE
Sbjct: 822 DTTTETASLLLGMNDSRQDKA--KKQRSDNPFSFPRQKRSVRPRMYLSIDSDSE 873



>AT5G41580.1 | chr5:16626563-16630659 REVERSE LENGTH=761
          Length = 760

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 346 DSDSDLEVVAESVTVNLRCPNSGSRMRIAGRFKPCIHMGCFDLETFVELNQRSRKWQCPI 405
           ++  D +++     V+L CP S  R+++  + + C H+ CFD   +V +N R+  W+CP 
Sbjct: 295 EASPDSDIIEGPSRVSLSCPISRKRIKLPVKGQLCKHLQCFDFSNYVHINMRNPTWRCPH 354

Query: 406 CLKNYSLESLMIDPYFNRITSLLRNCNEDVNEVDVKPDGSWRV 448
           C +      + +D     +  +L++   +  +V +   G+W+V
Sbjct: 355 CNQPVCYPDIRLD---QNMAKILKDVEHNAADVIIDAGGTWKV 394



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,535,227
Number of extensions: 937947
Number of successful extensions: 2443
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2431
Number of HSP's successfully gapped: 2
Length of query: 875
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 768
Effective length of database: 8,173,057
Effective search space: 6276907776
Effective search space used: 6276907776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)